Strain Fitness in Marinobacter adhaerens HP15 around HP15_1628

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1625 and HP15_1626 are separated by 167 nucleotidesHP15_1626 and HP15_1627 are separated by 170 nucleotidesHP15_1627 and HP15_1628 are separated by 251 nucleotidesHP15_1628 and HP15_1629 are separated by 116 nucleotides HP15_1625: HP15_1625 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,723,570 to 1,724,538 _1625 HP15_1626: HP15_1626 - conserved hypothetical protein, at 1,724,706 to 1,724,957 _1626 HP15_1627: HP15_1627 - conserved hypothetical protein, at 1,725,128 to 1,725,280 _1627 HP15_1628: HP15_1628 - peptidoglycan-binding domain 1 protein-like protein, at 1,725,532 to 1,726,653 _1628 HP15_1629: HP15_1629 - methyl-accepting chemotaxis sensory transducer, at 1,726,770 to 1,728,719 _1629 Position (kb) 1725 1726 1727Strain fitness (log2 ratio) -1 0 1 2 3at 1724.547 kb on - strandat 1724.563 kb on - strandat 1724.572 kb on + strandat 1724.576 kb on - strandat 1724.591 kb on + strandat 1724.647 kb on + strandat 1724.666 kb on + strandat 1724.671 kb on + strandat 1724.671 kb on + strandat 1724.671 kb on + strandat 1724.674 kb on - strandat 1724.674 kb on - strandat 1724.679 kb on - strandat 1724.906 kb on + strand, within HP15_1626at 1724.914 kb on - strand, within HP15_1626at 1724.936 kb on - strandat 1724.960 kb on - strandat 1725.010 kb on + strandat 1725.187 kb on + strand, within HP15_1627at 1725.273 kb on - strandat 1725.473 kb on + strandat 1725.545 kb on + strandat 1725.650 kb on + strand, within HP15_1628at 1725.901 kb on - strand, within HP15_1628at 1725.947 kb on - strand, within HP15_1628at 1725.952 kb on - strand, within HP15_1628at 1726.040 kb on - strand, within HP15_1628at 1726.067 kb on + strand, within HP15_1628at 1726.116 kb on + strand, within HP15_1628at 1726.197 kb on + strand, within HP15_1628at 1726.218 kb on + strand, within HP15_1628at 1726.289 kb on + strand, within HP15_1628at 1726.297 kb on - strand, within HP15_1628at 1726.297 kb on - strand, within HP15_1628at 1726.300 kb on + strand, within HP15_1628at 1726.326 kb on + strand, within HP15_1628at 1726.395 kb on + strand, within HP15_1628at 1726.561 kb on + strandat 1726.579 kb on - strandat 1726.783 kb on + strandat 1726.791 kb on - strandat 1727.081 kb on - strand, within HP15_1629at 1727.086 kb on - strand, within HP15_1629at 1727.255 kb on + strand, within HP15_1629at 1727.265 kb on + strand, within HP15_1629at 1727.335 kb on - strand, within HP15_1629at 1727.465 kb on + strand, within HP15_1629at 1727.473 kb on - strand, within HP15_1629at 1727.510 kb on - strand, within HP15_1629at 1727.588 kb on + strand, within HP15_1629

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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1,724,547 - +1.1
1,724,563 - +1.5
1,724,572 + -0.9
1,724,576 - -0.1
1,724,591 + -0.9
1,724,647 + +0.0
1,724,666 + +2.4
1,724,671 + +2.1
1,724,671 + -0.1
1,724,671 + +2.6
1,724,674 - -0.0
1,724,674 - +0.5
1,724,679 - +0.1
1,724,906 + HP15_1626 0.79 +0.3
1,724,914 - HP15_1626 0.83 +0.5
1,724,936 - -0.4
1,724,960 - -0.3
1,725,010 + +2.0
1,725,187 + HP15_1627 0.39 +2.1
1,725,273 - -0.2
1,725,473 + -0.5
1,725,545 + -0.6
1,725,650 + HP15_1628 0.11 +2.0
1,725,901 - HP15_1628 0.33 +3.1
1,725,947 - HP15_1628 0.37 +0.4
1,725,952 - HP15_1628 0.37 -0.5
1,726,040 - HP15_1628 0.45 +0.6
1,726,067 + HP15_1628 0.48 +2.0
1,726,116 + HP15_1628 0.52 -0.4
1,726,197 + HP15_1628 0.59 +0.1
1,726,218 + HP15_1628 0.61 -0.2
1,726,289 + HP15_1628 0.67 +1.8
1,726,297 - HP15_1628 0.68 +2.0
1,726,297 - HP15_1628 0.68 -0.5
1,726,300 + HP15_1628 0.68 +0.1
1,726,326 + HP15_1628 0.71 +1.4
1,726,395 + HP15_1628 0.77 -0.7
1,726,561 + -0.8
1,726,579 - -0.1
1,726,783 + -0.7
1,726,791 - -0.6
1,727,081 - HP15_1629 0.16 -0.5
1,727,086 - HP15_1629 0.16 -0.2
1,727,255 + HP15_1629 0.25 -0.5
1,727,265 + HP15_1629 0.25 -0.2
1,727,335 - HP15_1629 0.29 +0.1
1,727,465 + HP15_1629 0.36 -0.8
1,727,473 - HP15_1629 0.36 +0.1
1,727,510 - HP15_1629 0.38 -0.4
1,727,588 + HP15_1629 0.42 -0.5

Or see this region's nucleotide sequence