Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1574 and HP15_1575 are separated by 136 nucleotides HP15_1575 and HP15_1576 overlap by 4 nucleotides
HP15_1574: HP15_1574 - formate dehydrogenase, alpha subunit, at 1,655,926 to 1,658,817
_1574
HP15_1575: HP15_1575 - metallophosphoesterase, at 1,658,954 to 1,660,075
_1575
HP15_1576: HP15_1576 - GTP-binding protein, at 1,660,072 to 1,662,720
_1576
Position (kb)
1658
1659
1660
1661 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1657.998 kb on - strand, within HP15_1574 at 1658.203 kb on + strand, within HP15_1574 at 1658.474 kb on - strand, within HP15_1574 at 1658.479 kb on + strand, within HP15_1574 at 1658.479 kb on + strand, within HP15_1574 at 1658.545 kb on - strand at 1658.545 kb on - strand at 1658.554 kb on + strand at 1658.760 kb on - strand at 1658.813 kb on - strand at 1658.962 kb on + strand at 1658.981 kb on - strand at 1659.024 kb on + strand at 1659.032 kb on - strand at 1659.128 kb on + strand, within HP15_1575 at 1659.137 kb on - strand, within HP15_1575 at 1659.239 kb on + strand, within HP15_1575 at 1659.336 kb on - strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.388 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.436 kb on - strand, within HP15_1575 at 1659.442 kb on - strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.525 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.659 kb on - strand, within HP15_1575 at 1659.665 kb on - strand, within HP15_1575 at 1659.737 kb on + strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575 at 1659.876 kb on - strand, within HP15_1575 at 1659.964 kb on - strand at 1660.000 kb on + strand at 1660.008 kb on - strand at 1660.156 kb on - strand at 1660.345 kb on - strand, within HP15_1576 at 1660.435 kb on - strand, within HP15_1576 at 1660.459 kb on + strand, within HP15_1576 at 1660.460 kb on - strand, within HP15_1576 at 1660.485 kb on + strand, within HP15_1576 at 1660.493 kb on - strand, within HP15_1576 at 1660.503 kb on - strand, within HP15_1576 at 1660.508 kb on - strand, within HP15_1576 at 1660.513 kb on - strand, within HP15_1576 at 1660.565 kb on + strand, within HP15_1576 at 1660.608 kb on + strand, within HP15_1576 at 1660.616 kb on - strand, within HP15_1576 at 1660.794 kb on + strand, within HP15_1576 at 1660.832 kb on + strand, within HP15_1576 at 1660.837 kb on + strand, within HP15_1576 at 1660.888 kb on + strand, within HP15_1576 at 1660.996 kb on + strand, within HP15_1576
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 1,657,998 - HP15_1574 0.72 +1.9 1,658,203 + HP15_1574 0.79 +0.0 1,658,474 - HP15_1574 0.88 -0.7 1,658,479 + HP15_1574 0.88 -0.4 1,658,479 + HP15_1574 0.88 -1.2 1,658,545 - -0.3 1,658,545 - -0.0 1,658,554 + -0.5 1,658,760 - -0.2 1,658,813 - +1.6 1,658,962 + -0.1 1,658,981 - -0.5 1,659,024 + +2.2 1,659,032 - -0.1 1,659,128 + HP15_1575 0.16 -0.4 1,659,137 - HP15_1575 0.16 +1.1 1,659,239 + HP15_1575 0.25 +1.1 1,659,336 - HP15_1575 0.34 -0.2 1,659,358 + HP15_1575 0.36 -0.6 1,659,358 + HP15_1575 0.36 -0.8 1,659,388 + HP15_1575 0.39 -1.4 1,659,434 + HP15_1575 0.43 +0.5 1,659,434 + HP15_1575 0.43 -0.6 1,659,436 - HP15_1575 0.43 +0.5 1,659,442 - HP15_1575 0.43 -0.7 1,659,446 + HP15_1575 0.44 -0.9 1,659,446 + HP15_1575 0.44 -0.7 1,659,525 + HP15_1575 0.51 -0.3 1,659,549 + HP15_1575 0.53 -0.8 1,659,549 + HP15_1575 0.53 -0.3 1,659,557 - HP15_1575 0.54 -0.9 1,659,557 - HP15_1575 0.54 +0.3 1,659,659 - HP15_1575 0.63 -0.5 1,659,665 - HP15_1575 0.63 -1.4 1,659,737 + HP15_1575 0.70 +0.3 1,659,768 - HP15_1575 0.73 -0.4 1,659,768 - HP15_1575 0.73 +1.7 1,659,876 - HP15_1575 0.82 -0.5 1,659,964 - +2.4 1,660,000 + -0.5 1,660,008 - -0.7 1,660,156 - +1.8 1,660,345 - HP15_1576 0.10 -0.0 1,660,435 - HP15_1576 0.14 -0.6 1,660,459 + HP15_1576 0.15 -0.6 1,660,460 - HP15_1576 0.15 +1.8 1,660,485 + HP15_1576 0.16 +1.9 1,660,493 - HP15_1576 0.16 -0.2 1,660,503 - HP15_1576 0.16 +2.6 1,660,508 - HP15_1576 0.16 +2.1 1,660,513 - HP15_1576 0.17 -1.9 1,660,565 + HP15_1576 0.19 +1.9 1,660,608 + HP15_1576 0.20 -0.0 1,660,616 - HP15_1576 0.21 +0.4 1,660,794 + HP15_1576 0.27 +1.5 1,660,832 + HP15_1576 0.29 -1.0 1,660,837 + HP15_1576 0.29 -2.6 1,660,888 + HP15_1576 0.31 +0.0 1,660,996 + HP15_1576 0.35 -0.2
Or see this region's nucleotide sequence