Strain Fitness in Marinobacter adhaerens HP15 around HP15_1575

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1574 and HP15_1575 are separated by 136 nucleotidesHP15_1575 and HP15_1576 overlap by 4 nucleotides HP15_1574: HP15_1574 - formate dehydrogenase, alpha subunit, at 1,655,926 to 1,658,817 _1574 HP15_1575: HP15_1575 - metallophosphoesterase, at 1,658,954 to 1,660,075 _1575 HP15_1576: HP15_1576 - GTP-binding protein, at 1,660,072 to 1,662,720 _1576 Position (kb) 1658 1659 1660 1661Strain fitness (log2 ratio) -2 -1 0 1 2at 1657.998 kb on - strand, within HP15_1574at 1658.203 kb on + strand, within HP15_1574at 1658.474 kb on - strand, within HP15_1574at 1658.479 kb on + strand, within HP15_1574at 1658.479 kb on + strand, within HP15_1574at 1658.545 kb on - strandat 1658.545 kb on - strandat 1658.554 kb on + strandat 1658.760 kb on - strandat 1658.813 kb on - strandat 1658.962 kb on + strandat 1658.981 kb on - strandat 1659.024 kb on + strandat 1659.032 kb on - strandat 1659.128 kb on + strand, within HP15_1575at 1659.137 kb on - strand, within HP15_1575at 1659.239 kb on + strand, within HP15_1575at 1659.336 kb on - strand, within HP15_1575at 1659.358 kb on + strand, within HP15_1575at 1659.358 kb on + strand, within HP15_1575at 1659.388 kb on + strand, within HP15_1575at 1659.434 kb on + strand, within HP15_1575at 1659.434 kb on + strand, within HP15_1575at 1659.436 kb on - strand, within HP15_1575at 1659.442 kb on - strand, within HP15_1575at 1659.446 kb on + strand, within HP15_1575at 1659.446 kb on + strand, within HP15_1575at 1659.525 kb on + strand, within HP15_1575at 1659.549 kb on + strand, within HP15_1575at 1659.549 kb on + strand, within HP15_1575at 1659.557 kb on - strand, within HP15_1575at 1659.557 kb on - strand, within HP15_1575at 1659.659 kb on - strand, within HP15_1575at 1659.665 kb on - strand, within HP15_1575at 1659.737 kb on + strand, within HP15_1575at 1659.768 kb on - strand, within HP15_1575at 1659.768 kb on - strand, within HP15_1575at 1659.876 kb on - strand, within HP15_1575at 1659.964 kb on - strandat 1660.000 kb on + strandat 1660.008 kb on - strandat 1660.156 kb on - strandat 1660.345 kb on - strand, within HP15_1576at 1660.435 kb on - strand, within HP15_1576at 1660.459 kb on + strand, within HP15_1576at 1660.460 kb on - strand, within HP15_1576at 1660.485 kb on + strand, within HP15_1576at 1660.493 kb on - strand, within HP15_1576at 1660.503 kb on - strand, within HP15_1576at 1660.508 kb on - strand, within HP15_1576at 1660.513 kb on - strand, within HP15_1576at 1660.565 kb on + strand, within HP15_1576at 1660.608 kb on + strand, within HP15_1576at 1660.616 kb on - strand, within HP15_1576at 1660.794 kb on + strand, within HP15_1576at 1660.832 kb on + strand, within HP15_1576at 1660.837 kb on + strand, within HP15_1576at 1660.888 kb on + strand, within HP15_1576at 1660.996 kb on + strand, within HP15_1576

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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1,657,998 - HP15_1574 0.72 +1.9
1,658,203 + HP15_1574 0.79 +0.0
1,658,474 - HP15_1574 0.88 -0.7
1,658,479 + HP15_1574 0.88 -0.4
1,658,479 + HP15_1574 0.88 -1.2
1,658,545 - -0.3
1,658,545 - -0.0
1,658,554 + -0.5
1,658,760 - -0.2
1,658,813 - +1.6
1,658,962 + -0.1
1,658,981 - -0.5
1,659,024 + +2.2
1,659,032 - -0.1
1,659,128 + HP15_1575 0.16 -0.4
1,659,137 - HP15_1575 0.16 +1.1
1,659,239 + HP15_1575 0.25 +1.1
1,659,336 - HP15_1575 0.34 -0.2
1,659,358 + HP15_1575 0.36 -0.6
1,659,358 + HP15_1575 0.36 -0.8
1,659,388 + HP15_1575 0.39 -1.4
1,659,434 + HP15_1575 0.43 +0.5
1,659,434 + HP15_1575 0.43 -0.6
1,659,436 - HP15_1575 0.43 +0.5
1,659,442 - HP15_1575 0.43 -0.7
1,659,446 + HP15_1575 0.44 -0.9
1,659,446 + HP15_1575 0.44 -0.7
1,659,525 + HP15_1575 0.51 -0.3
1,659,549 + HP15_1575 0.53 -0.8
1,659,549 + HP15_1575 0.53 -0.3
1,659,557 - HP15_1575 0.54 -0.9
1,659,557 - HP15_1575 0.54 +0.3
1,659,659 - HP15_1575 0.63 -0.5
1,659,665 - HP15_1575 0.63 -1.4
1,659,737 + HP15_1575 0.70 +0.3
1,659,768 - HP15_1575 0.73 -0.4
1,659,768 - HP15_1575 0.73 +1.7
1,659,876 - HP15_1575 0.82 -0.5
1,659,964 - +2.4
1,660,000 + -0.5
1,660,008 - -0.7
1,660,156 - +1.8
1,660,345 - HP15_1576 0.10 -0.0
1,660,435 - HP15_1576 0.14 -0.6
1,660,459 + HP15_1576 0.15 -0.6
1,660,460 - HP15_1576 0.15 +1.8
1,660,485 + HP15_1576 0.16 +1.9
1,660,493 - HP15_1576 0.16 -0.2
1,660,503 - HP15_1576 0.16 +2.6
1,660,508 - HP15_1576 0.16 +2.1
1,660,513 - HP15_1576 0.17 -1.9
1,660,565 + HP15_1576 0.19 +1.9
1,660,608 + HP15_1576 0.20 -0.0
1,660,616 - HP15_1576 0.21 +0.4
1,660,794 + HP15_1576 0.27 +1.5
1,660,832 + HP15_1576 0.29 -1.0
1,660,837 + HP15_1576 0.29 -2.6
1,660,888 + HP15_1576 0.31 +0.0
1,660,996 + HP15_1576 0.35 -0.2

Or see this region's nucleotide sequence