Strain Fitness in Marinobacter adhaerens HP15 around HP15_1398

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1397 and HP15_1398 are separated by 137 nucleotidesHP15_1398 and HP15_1399 are separated by 153 nucleotides HP15_1397: HP15_1397 - peroxidase/catalase HPI, at 1,471,884 to 1,474,106 _1397 HP15_1398: HP15_1398 - tRNA-dihydrouridine synthase C, at 1,474,244 to 1,475,215 _1398 HP15_1399: HP15_1399 - metal-dependent hydrolase-like protein, at 1,475,369 to 1,476,334 _1399 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -2 -1 0 1 2at 1473.329 kb on + strand, within HP15_1397at 1473.329 kb on + strand, within HP15_1397at 1473.367 kb on + strand, within HP15_1397at 1473.541 kb on - strand, within HP15_1397at 1473.694 kb on - strand, within HP15_1397at 1473.908 kb on - strandat 1473.942 kb on + strandat 1474.003 kb on + strandat 1474.074 kb on + strandat 1474.110 kb on - strandat 1474.121 kb on + strandat 1474.325 kb on - strandat 1474.431 kb on + strand, within HP15_1398at 1474.506 kb on + strand, within HP15_1398at 1474.558 kb on + strand, within HP15_1398at 1474.566 kb on - strand, within HP15_1398at 1474.577 kb on - strand, within HP15_1398at 1474.582 kb on - strand, within HP15_1398at 1474.621 kb on + strand, within HP15_1398at 1474.719 kb on + strand, within HP15_1398at 1474.817 kb on + strand, within HP15_1398at 1474.866 kb on + strand, within HP15_1398at 1474.875 kb on + strand, within HP15_1398at 1474.883 kb on - strand, within HP15_1398at 1474.934 kb on + strand, within HP15_1398at 1474.989 kb on - strand, within HP15_1398at 1475.000 kb on - strand, within HP15_1398at 1475.051 kb on - strand, within HP15_1398at 1475.172 kb on + strandat 1475.180 kb on - strandat 1475.251 kb on - strandat 1475.265 kb on + strandat 1475.453 kb on + strandat 1475.461 kb on - strandat 1475.461 kb on - strandat 1475.499 kb on - strand, within HP15_1399at 1475.503 kb on - strand, within HP15_1399at 1475.667 kb on + strand, within HP15_1399at 1475.675 kb on - strand, within HP15_1399at 1475.835 kb on - strand, within HP15_1399at 1475.937 kb on - strand, within HP15_1399at 1475.969 kb on + strand, within HP15_1399at 1475.999 kb on + strand, within HP15_1399at 1476.212 kb on + strand, within HP15_1399

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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1,473,329 + HP15_1397 0.65 -0.4
1,473,329 + HP15_1397 0.65 -0.2
1,473,367 + HP15_1397 0.67 -0.3
1,473,541 - HP15_1397 0.75 -1.6
1,473,694 - HP15_1397 0.81 -0.2
1,473,908 - +0.2
1,473,942 + +2.3
1,474,003 + -0.4
1,474,074 + -0.1
1,474,110 - +0.1
1,474,121 + +0.1
1,474,325 - -1.3
1,474,431 + HP15_1398 0.19 -1.0
1,474,506 + HP15_1398 0.27 +1.4
1,474,558 + HP15_1398 0.32 -0.3
1,474,566 - HP15_1398 0.33 -0.6
1,474,577 - HP15_1398 0.34 -1.5
1,474,582 - HP15_1398 0.35 -0.6
1,474,621 + HP15_1398 0.39 -1.0
1,474,719 + HP15_1398 0.49 -0.5
1,474,817 + HP15_1398 0.59 +0.9
1,474,866 + HP15_1398 0.64 +0.4
1,474,875 + HP15_1398 0.65 -0.9
1,474,883 - HP15_1398 0.66 -0.3
1,474,934 + HP15_1398 0.71 +2.5
1,474,989 - HP15_1398 0.77 +0.1
1,475,000 - HP15_1398 0.78 -1.3
1,475,051 - HP15_1398 0.83 -0.6
1,475,172 + -1.5
1,475,180 - -1.3
1,475,251 - +0.4
1,475,265 + +1.2
1,475,453 + +1.8
1,475,461 - +0.4
1,475,461 - -0.2
1,475,499 - HP15_1399 0.13 -0.2
1,475,503 - HP15_1399 0.14 -0.9
1,475,667 + HP15_1399 0.31 -0.5
1,475,675 - HP15_1399 0.32 +0.0
1,475,835 - HP15_1399 0.48 -2.0
1,475,937 - HP15_1399 0.59 -0.0
1,475,969 + HP15_1399 0.62 -0.7
1,475,999 + HP15_1399 0.65 -1.1
1,476,212 + HP15_1399 0.87 -0.9

Or see this region's nucleotide sequence