Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1393 and HP15_1394 overlap by 4 nucleotides HP15_1394 and HP15_1395 are separated by 248 nucleotides HP15_1395 and HP15_1396 are separated by 6 nucleotides HP15_1396 and HP15_1397 are separated by 314 nucleotides
HP15_1393: HP15_1393 - thioesterase superfamily protein, at 1,468,302 to 1,468,772
_1393
HP15_1394: HP15_1394 - thioesterase superfamily protein, at 1,468,769 to 1,469,203
_1394
HP15_1395: HP15_1395 - heat shock protein 90, at 1,469,452 to 1,471,344
_1395
HP15_1396: HP15_1396 - conserved hypothetical protein, at 1,471,351 to 1,471,569
_1396
HP15_1397: HP15_1397 - peroxidase/catalase HPI, at 1,471,884 to 1,474,106
_1397
Position (kb)
1469
1470
1471
1472 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1468.477 kb on + strand, within HP15_1393 at 1468.497 kb on + strand, within HP15_1393 at 1468.566 kb on + strand, within HP15_1393 at 1468.607 kb on - strand, within HP15_1393 at 1468.759 kb on - strand at 1468.921 kb on + strand, within HP15_1394 at 1469.047 kb on + strand, within HP15_1394 at 1469.310 kb on + strand at 1469.773 kb on - strand, within HP15_1395 at 1469.826 kb on + strand, within HP15_1395 at 1469.914 kb on - strand, within HP15_1395 at 1469.998 kb on - strand, within HP15_1395 at 1470.109 kb on + strand, within HP15_1395 at 1470.151 kb on - strand, within HP15_1395 at 1470.161 kb on - strand, within HP15_1395 at 1470.185 kb on - strand, within HP15_1395 at 1470.245 kb on + strand, within HP15_1395 at 1470.281 kb on - strand, within HP15_1395 at 1470.324 kb on - strand, within HP15_1395 at 1470.393 kb on + strand, within HP15_1395 at 1470.608 kb on - strand, within HP15_1395 at 1470.826 kb on - strand, within HP15_1395 at 1470.904 kb on - strand, within HP15_1395 at 1470.917 kb on + strand, within HP15_1395 at 1470.979 kb on + strand, within HP15_1395 at 1471.254 kb on - strand at 1471.256 kb on + strand at 1471.382 kb on + strand, within HP15_1396 at 1471.390 kb on - strand, within HP15_1396 at 1471.390 kb on - strand, within HP15_1396 at 1471.410 kb on + strand, within HP15_1396 at 1471.423 kb on + strand, within HP15_1396 at 1471.433 kb on - strand, within HP15_1396 at 1471.446 kb on - strand, within HP15_1396 at 1471.563 kb on + strand at 1471.571 kb on - strand at 1471.669 kb on - strand at 1471.684 kb on - strand at 1471.693 kb on + strand at 1471.884 kb on - strand at 1471.891 kb on + strand at 1471.949 kb on - strand at 1472.052 kb on - strand at 1472.311 kb on - strand, within HP15_1397
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 1,468,477 + HP15_1393 0.37 -0.4 1,468,497 + HP15_1393 0.41 +1.7 1,468,566 + HP15_1393 0.56 -0.9 1,468,607 - HP15_1393 0.65 -0.8 1,468,759 - +1.7 1,468,921 + HP15_1394 0.35 +2.7 1,469,047 + HP15_1394 0.64 +1.7 1,469,310 + +0.1 1,469,773 - HP15_1395 0.17 +1.6 1,469,826 + HP15_1395 0.20 -0.2 1,469,914 - HP15_1395 0.24 +2.0 1,469,998 - HP15_1395 0.29 +2.3 1,470,109 + HP15_1395 0.35 +2.0 1,470,151 - HP15_1395 0.37 -0.2 1,470,161 - HP15_1395 0.37 +2.3 1,470,185 - HP15_1395 0.39 +1.8 1,470,245 + HP15_1395 0.42 +2.6 1,470,281 - HP15_1395 0.44 -0.3 1,470,324 - HP15_1395 0.46 -0.9 1,470,393 + HP15_1395 0.50 -0.4 1,470,608 - HP15_1395 0.61 -1.1 1,470,826 - HP15_1395 0.73 +0.7 1,470,904 - HP15_1395 0.77 -0.5 1,470,917 + HP15_1395 0.77 -0.7 1,470,979 + HP15_1395 0.81 -0.7 1,471,254 - +1.9 1,471,256 + +2.2 1,471,382 + HP15_1396 0.14 -0.0 1,471,390 - HP15_1396 0.18 -0.8 1,471,390 - HP15_1396 0.18 +2.2 1,471,410 + HP15_1396 0.27 +2.0 1,471,423 + HP15_1396 0.33 -0.2 1,471,433 - HP15_1396 0.37 -0.1 1,471,446 - HP15_1396 0.43 -0.4 1,471,563 + -2.5 1,471,571 - -0.6 1,471,669 - +0.7 1,471,684 - +2.6 1,471,693 + -0.5 1,471,884 - -0.4 1,471,891 + -0.3 1,471,949 - -1.1 1,472,052 - +0.1 1,472,311 - HP15_1397 0.19 +2.2
Or see this region's nucleotide sequence