Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1373 and HP15_1374 are separated by 153 nucleotides HP15_1374 and HP15_1375 are separated by 19 nucleotides
HP15_1373: HP15_1373 - acetyltransferase, GNAT family, at 1,447,154 to 1,448,272
_1373
HP15_1374: HP15_1374 - glutathione synthase/ribosomal protein S6 modification enzyme, at 1,448,426 to 1,449,973
_1374
HP15_1375: HP15_1375 - cation diffusion facilitator family transporter, at 1,449,993 to 1,451,151
_1375
Position (kb)
1448
1449
1450 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1447.854 kb on - strand, within HP15_1373 at 1447.878 kb on - strand, within HP15_1373 at 1447.889 kb on - strand, within HP15_1373 at 1447.898 kb on + strand, within HP15_1373 at 1448.005 kb on + strand, within HP15_1373 at 1448.060 kb on - strand, within HP15_1373 at 1448.092 kb on - strand, within HP15_1373 at 1448.092 kb on - strand, within HP15_1373 at 1448.329 kb on + strand at 1448.361 kb on + strand at 1448.371 kb on - strand at 1448.444 kb on + strand at 1448.569 kb on - strand at 1448.590 kb on + strand, within HP15_1374 at 1448.629 kb on + strand, within HP15_1374 at 1448.678 kb on + strand, within HP15_1374 at 1448.720 kb on + strand, within HP15_1374 at 1448.886 kb on + strand, within HP15_1374 at 1448.987 kb on + strand, within HP15_1374 at 1449.100 kb on + strand, within HP15_1374 at 1449.186 kb on - strand, within HP15_1374 at 1449.304 kb on + strand, within HP15_1374 at 1449.445 kb on + strand, within HP15_1374 at 1449.603 kb on - strand, within HP15_1374 at 1449.913 kb on + strand at 1449.958 kb on + strand at 1450.011 kb on + strand at 1450.019 kb on - strand at 1450.093 kb on - strand at 1450.114 kb on - strand, within HP15_1375 at 1450.197 kb on - strand, within HP15_1375 at 1450.199 kb on + strand, within HP15_1375 at 1450.266 kb on + strand, within HP15_1375 at 1450.279 kb on + strand, within HP15_1375 at 1450.284 kb on + strand, within HP15_1375 at 1450.482 kb on - strand, within HP15_1375 at 1450.532 kb on - strand, within HP15_1375 at 1450.574 kb on + strand, within HP15_1375 at 1450.579 kb on + strand, within HP15_1375 at 1450.778 kb on - strand, within HP15_1375 at 1450.780 kb on + strand, within HP15_1375 at 1450.827 kb on - strand, within HP15_1375 at 1450.852 kb on + strand, within HP15_1375 at 1450.860 kb on - strand, within HP15_1375 at 1450.937 kb on - strand, within HP15_1375
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 1,447,854 - HP15_1373 0.63 +2.7 1,447,878 - HP15_1373 0.65 -0.8 1,447,889 - HP15_1373 0.66 +0.2 1,447,898 + HP15_1373 0.66 +2.5 1,448,005 + HP15_1373 0.76 -0.9 1,448,060 - HP15_1373 0.81 -0.4 1,448,092 - HP15_1373 0.84 -0.1 1,448,092 - HP15_1373 0.84 +2.0 1,448,329 + +1.9 1,448,361 + -0.5 1,448,371 - +0.1 1,448,444 + -0.3 1,448,569 - -0.5 1,448,590 + HP15_1374 0.11 -0.0 1,448,629 + HP15_1374 0.13 -0.8 1,448,678 + HP15_1374 0.16 +0.1 1,448,720 + HP15_1374 0.19 -0.7 1,448,886 + HP15_1374 0.30 -0.0 1,448,987 + HP15_1374 0.36 -0.7 1,449,100 + HP15_1374 0.44 -0.6 1,449,186 - HP15_1374 0.49 +0.7 1,449,304 + HP15_1374 0.57 -0.7 1,449,445 + HP15_1374 0.66 -1.0 1,449,603 - HP15_1374 0.76 -1.2 1,449,913 + +1.7 1,449,958 + +2.9 1,450,011 + +1.8 1,450,019 - +0.3 1,450,093 - +1.9 1,450,114 - HP15_1375 0.10 +2.1 1,450,197 - HP15_1375 0.18 -0.7 1,450,199 + HP15_1375 0.18 -0.1 1,450,266 + HP15_1375 0.24 +2.2 1,450,279 + HP15_1375 0.25 +2.4 1,450,284 + HP15_1375 0.25 -0.0 1,450,482 - HP15_1375 0.42 +1.9 1,450,532 - HP15_1375 0.47 -0.5 1,450,574 + HP15_1375 0.50 +1.6 1,450,579 + HP15_1375 0.51 -0.3 1,450,778 - HP15_1375 0.68 +2.0 1,450,780 + HP15_1375 0.68 +0.0 1,450,827 - HP15_1375 0.72 -0.0 1,450,852 + HP15_1375 0.74 -0.2 1,450,860 - HP15_1375 0.75 -1.0 1,450,937 - HP15_1375 0.81 -1.3
Or see this region's nucleotide sequence