Strain Fitness in Marinobacter adhaerens HP15 around HP15_1305

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1303 and HP15_1304 are separated by 12 nucleotidesHP15_1304 and HP15_1305 are separated by 0 nucleotidesHP15_1305 and HP15_1306 are separated by 223 nucleotides HP15_1303: HP15_1303 - chromosome partitioning protein, ParA family, at 1,363,192 to 1,363,980 _1303 HP15_1304: HP15_1304 - protein containing DUF446, at 1,363,993 to 1,364,328 _1304 HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168 _1305 HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689 _1306 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -1 0 1 2at 1363.361 kb on - strand, within HP15_1303at 1363.393 kb on + strand, within HP15_1303at 1363.457 kb on + strand, within HP15_1303at 1363.636 kb on - strand, within HP15_1303at 1363.669 kb on + strand, within HP15_1303at 1363.671 kb on + strand, within HP15_1303at 1363.677 kb on - strand, within HP15_1303at 1363.679 kb on - strand, within HP15_1303at 1363.679 kb on - strand, within HP15_1303at 1363.679 kb on - strand, within HP15_1303at 1363.751 kb on + strand, within HP15_1303at 1363.980 kb on + strandat 1363.997 kb on - strandat 1364.069 kb on + strand, within HP15_1304at 1364.321 kb on - strandat 1365.194 kb on - strandat 1365.246 kb on + strandat 1365.248 kb on - strandat 1365.278 kb on + strandat 1365.375 kb on - strandat 1365.395 kb on - strandat 1365.483 kb on + strandat 1365.488 kb on + strandat 1365.534 kb on + strandat 1365.552 kb on - strandat 1365.652 kb on - strand, within HP15_1306at 1365.710 kb on - strand, within HP15_1306at 1365.864 kb on + strand, within HP15_1306at 1365.923 kb on + strand, within HP15_1306at 1365.923 kb on + strand, within HP15_1306at 1365.928 kb on + strand, within HP15_1306at 1365.933 kb on + strand, within HP15_1306at 1366.083 kb on + strand, within HP15_1306at 1366.136 kb on - strand, within HP15_1306

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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1,363,361 - HP15_1303 0.21 -1.3
1,363,393 + HP15_1303 0.25 -0.6
1,363,457 + HP15_1303 0.34 +2.3
1,363,636 - HP15_1303 0.56 +1.7
1,363,669 + HP15_1303 0.60 -0.4
1,363,671 + HP15_1303 0.61 +2.1
1,363,677 - HP15_1303 0.61 +2.3
1,363,679 - HP15_1303 0.62 -0.1
1,363,679 - HP15_1303 0.62 -0.9
1,363,679 - HP15_1303 0.62 -0.7
1,363,751 + HP15_1303 0.71 +1.7
1,363,980 + +0.1
1,363,997 - +0.6
1,364,069 + HP15_1304 0.23 +0.9
1,364,321 - -0.5
1,365,194 - +2.1
1,365,246 + -0.2
1,365,248 - -0.7
1,365,278 + +2.0
1,365,375 - +0.5
1,365,395 - +0.2
1,365,483 + -0.9
1,365,488 + +0.1
1,365,534 + +2.5
1,365,552 - -0.3
1,365,652 - HP15_1306 0.11 -0.7
1,365,710 - HP15_1306 0.14 +2.5
1,365,864 + HP15_1306 0.21 +0.6
1,365,923 + HP15_1306 0.23 -0.7
1,365,923 + HP15_1306 0.23 +1.7
1,365,928 + HP15_1306 0.23 -0.3
1,365,933 + HP15_1306 0.24 -0.1
1,366,083 + HP15_1306 0.30 +0.3
1,366,136 - HP15_1306 0.32 -0.5

Or see this region's nucleotide sequence