Strain Fitness in Marinobacter adhaerens HP15 around HP15_1104

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1103 and HP15_1104 are separated by 320 nucleotidesHP15_1104 and HP15_1105 are separated by 564 nucleotides HP15_1103: HP15_1103 - protein containing Helix-turn-helix, AraC domain, at 1,129,751 to 1,130,716 _1103 HP15_1104: HP15_1104 - transposase, IS4 family protein-like protein, at 1,131,037 to 1,131,600 _1104 HP15_1105: HP15_1105 - hypothetical protein, at 1,132,165 to 1,132,290 _1105 Position (kb) 1131 1132Strain fitness (log2 ratio) -1 0 1 2at 1130.340 kb on + strand, within HP15_1103at 1130.506 kb on + strand, within HP15_1103at 1130.651 kb on + strandat 1130.843 kb on + strandat 1130.853 kb on + strandat 1130.870 kb on + strandat 1130.986 kb on - strandat 1130.999 kb on + strandat 1131.035 kb on - strandat 1131.046 kb on + strandat 1131.054 kb on - strandat 1131.091 kb on - strandat 1131.091 kb on - strandat 1131.180 kb on + strand, within HP15_1104at 1131.298 kb on + strand, within HP15_1104at 1131.342 kb on - strand, within HP15_1104at 1131.346 kb on + strand, within HP15_1104at 1131.384 kb on + strand, within HP15_1104at 1131.427 kb on + strand, within HP15_1104at 1131.505 kb on - strand, within HP15_1104at 1131.630 kb on + strandat 1131.640 kb on + strandat 1131.682 kb on - strandat 1131.721 kb on + strandat 1131.741 kb on + strandat 1131.741 kb on + strandat 1131.765 kb on + strandat 1131.774 kb on - strandat 1131.786 kb on - strandat 1131.801 kb on - strandat 1131.814 kb on + strandat 1131.820 kb on - strandat 1131.873 kb on + strandat 1131.952 kb on - strandat 1131.987 kb on + strandat 1132.044 kb on - strandat 1132.080 kb on + strandat 1132.082 kb on + strandat 1132.088 kb on - strandat 1132.090 kb on - strandat 1132.220 kb on + strand, within HP15_1105at 1132.230 kb on + strand, within HP15_1105at 1132.283 kb on + strandat 1132.293 kb on + strandat 1132.310 kb on + strandat 1132.321 kb on - strandat 1132.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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1,130,340 + HP15_1103 0.61 -0.5
1,130,506 + HP15_1103 0.78 +0.3
1,130,651 + -0.2
1,130,843 + -0.4
1,130,853 + -0.2
1,130,870 + +0.1
1,130,986 - -1.1
1,130,999 + +1.3
1,131,035 - -0.4
1,131,046 + -0.1
1,131,054 - +0.3
1,131,091 - -0.6
1,131,091 - +2.6
1,131,180 + HP15_1104 0.25 +1.7
1,131,298 + HP15_1104 0.46 -0.1
1,131,342 - HP15_1104 0.54 +2.4
1,131,346 + HP15_1104 0.55 +2.5
1,131,384 + HP15_1104 0.62 -1.0
1,131,427 + HP15_1104 0.69 +1.5
1,131,505 - HP15_1104 0.83 +2.1
1,131,630 + +2.1
1,131,640 + +2.3
1,131,682 - +0.7
1,131,721 + -0.1
1,131,741 + -0.2
1,131,741 + +0.5
1,131,765 + +0.2
1,131,774 - +0.8
1,131,786 - -1.7
1,131,801 - +1.8
1,131,814 + -0.6
1,131,820 - +1.2
1,131,873 + +0.0
1,131,952 - +0.6
1,131,987 + -1.1
1,132,044 - +1.7
1,132,080 + -0.3
1,132,082 + +0.1
1,132,088 - +1.9
1,132,090 - +0.1
1,132,220 + HP15_1105 0.44 -0.1
1,132,230 + HP15_1105 0.52 +2.2
1,132,283 + -0.2
1,132,293 + +0.2
1,132,310 + +2.1
1,132,321 - +2.7
1,132,370 - +1.8

Or see this region's nucleotide sequence