Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_106 and HP15_107 are separated by 271 nucleotides HP15_107 and HP15_108 overlap by 2 nucleotides
HP15_106: HP15_106 - conserved hypothetical protein, secreted, at 109,741 to 110,991
_106
HP15_107: HP15_107 - hypothetical protein, at 111,263 to 111,523
_107
HP15_108: HP15_108 - outer membrane efflux protein, at 111,522 to 112,619
_108
Position (kb)
111
112 Strain fitness (log2 ratio)
-1
0
1
2 at 110.264 kb on - strand, within HP15_106 at 110.276 kb on + strand, within HP15_106 at 110.358 kb on + strand, within HP15_106 at 110.402 kb on - strand, within HP15_106 at 110.409 kb on - strand, within HP15_106 at 110.424 kb on - strand, within HP15_106 at 110.425 kb on - strand, within HP15_106 at 110.451 kb on + strand, within HP15_106 at 110.459 kb on - strand, within HP15_106 at 110.462 kb on + strand, within HP15_106 at 110.484 kb on - strand, within HP15_106 at 110.484 kb on - strand, within HP15_106 at 110.518 kb on - strand, within HP15_106 at 110.621 kb on + strand, within HP15_106 at 110.665 kb on + strand, within HP15_106 at 110.732 kb on + strand, within HP15_106 at 110.732 kb on + strand, within HP15_106 at 110.740 kb on - strand, within HP15_106 at 110.779 kb on + strand, within HP15_106 at 110.779 kb on + strand, within HP15_106 at 110.787 kb on - strand, within HP15_106 at 110.804 kb on + strand, within HP15_106 at 110.819 kb on - strand, within HP15_106 at 110.842 kb on + strand, within HP15_106 at 110.850 kb on - strand, within HP15_106 at 110.884 kb on + strand at 110.894 kb on + strand at 110.902 kb on - strand at 110.910 kb on + strand at 110.918 kb on - strand at 110.918 kb on - strand at 110.979 kb on + strand at 110.987 kb on - strand at 111.037 kb on + strand at 111.037 kb on + strand at 111.037 kb on + strand at 111.040 kb on - strand at 111.045 kb on - strand at 111.045 kb on - strand at 111.063 kb on - strand at 111.121 kb on - strand at 111.132 kb on - strand at 111.146 kb on - strand at 111.251 kb on - strand at 111.314 kb on - strand, within HP15_107 at 111.338 kb on - strand, within HP15_107 at 111.399 kb on - strand, within HP15_107 at 111.436 kb on - strand, within HP15_107 at 111.498 kb on + strand at 111.508 kb on + strand at 111.558 kb on + strand at 111.568 kb on + strand at 111.574 kb on + strand at 111.576 kb on - strand at 111.576 kb on - strand at 111.577 kb on - strand at 111.598 kb on + strand at 111.611 kb on - strand at 111.641 kb on - strand, within HP15_108 at 111.683 kb on + strand, within HP15_108 at 111.698 kb on - strand, within HP15_108 at 111.706 kb on + strand, within HP15_108 at 111.825 kb on - strand, within HP15_108 at 111.831 kb on - strand, within HP15_108 at 111.838 kb on + strand, within HP15_108 at 111.862 kb on - strand, within HP15_108 at 111.878 kb on + strand, within HP15_108 at 111.911 kb on - strand, within HP15_108 at 111.935 kb on + strand, within HP15_108 at 111.985 kb on + strand, within HP15_108 at 112.003 kb on - strand, within HP15_108 at 112.008 kb on - strand, within HP15_108 at 112.011 kb on + strand, within HP15_108 at 112.024 kb on - strand, within HP15_108 at 112.024 kb on - strand, within HP15_108 at 112.028 kb on + strand, within HP15_108 at 112.028 kb on + strand, within HP15_108 at 112.028 kb on + strand, within HP15_108 at 112.083 kb on - strand, within HP15_108 at 112.093 kb on - strand, within HP15_108 at 112.151 kb on + strand, within HP15_108 at 112.175 kb on + strand, within HP15_108 at 112.249 kb on - strand, within HP15_108 at 112.360 kb on + strand, within HP15_108 at 112.378 kb on - strand, within HP15_108 at 112.480 kb on + strand, within HP15_108 at 112.488 kb on - strand, within HP15_108
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 110,264 - HP15_106 0.42 +2.2 110,276 + HP15_106 0.43 -1.5 110,358 + HP15_106 0.49 +0.2 110,402 - HP15_106 0.53 -0.2 110,409 - HP15_106 0.53 +2.2 110,424 - HP15_106 0.55 -1.0 110,425 - HP15_106 0.55 +1.9 110,451 + HP15_106 0.57 -0.4 110,459 - HP15_106 0.57 -1.5 110,462 + HP15_106 0.58 -0.2 110,484 - HP15_106 0.59 +0.7 110,484 - HP15_106 0.59 +1.7 110,518 - HP15_106 0.62 +2.5 110,621 + HP15_106 0.70 -0.4 110,665 + HP15_106 0.74 -0.3 110,732 + HP15_106 0.79 -1.0 110,732 + HP15_106 0.79 +0.1 110,740 - HP15_106 0.80 -0.3 110,779 + HP15_106 0.83 -0.5 110,779 + HP15_106 0.83 +2.4 110,787 - HP15_106 0.84 +2.4 110,804 + HP15_106 0.85 +2.1 110,819 - HP15_106 0.86 -0.9 110,842 + HP15_106 0.88 -0.1 110,850 - HP15_106 0.89 +2.3 110,884 + -0.1 110,894 + +1.6 110,902 - -0.2 110,910 + -0.4 110,918 - +0.7 110,918 - +1.9 110,979 + -0.4 110,987 - +1.8 111,037 + -1.3 111,037 + -0.6 111,037 + -0.6 111,040 - -1.2 111,045 - -0.2 111,045 - +2.1 111,063 - +2.3 111,121 - -0.3 111,132 - +2.3 111,146 - +0.9 111,251 - +2.3 111,314 - HP15_107 0.20 -0.1 111,338 - HP15_107 0.29 +2.2 111,399 - HP15_107 0.52 +0.7 111,436 - HP15_107 0.66 +1.8 111,498 + -0.3 111,508 + +2.2 111,558 + -0.7 111,568 + -0.8 111,574 + -0.6 111,576 - +2.0 111,576 - -0.1 111,577 - +0.2 111,598 + +1.7 111,611 - +0.5 111,641 - HP15_108 0.11 -0.5 111,683 + HP15_108 0.15 -1.1 111,698 - HP15_108 0.16 +0.3 111,706 + HP15_108 0.17 -1.5 111,825 - HP15_108 0.28 +2.5 111,831 - HP15_108 0.28 -0.3 111,838 + HP15_108 0.29 -0.4 111,862 - HP15_108 0.31 +0.4 111,878 + HP15_108 0.32 -0.4 111,911 - HP15_108 0.35 -0.0 111,935 + HP15_108 0.38 +1.8 111,985 + HP15_108 0.42 +0.6 112,003 - HP15_108 0.44 -0.9 112,008 - HP15_108 0.44 +1.5 112,011 + HP15_108 0.45 +0.6 112,024 - HP15_108 0.46 -0.7 112,024 - HP15_108 0.46 -0.7 112,028 + HP15_108 0.46 +0.1 112,028 + HP15_108 0.46 -0.5 112,028 + HP15_108 0.46 -0.1 112,083 - HP15_108 0.51 -0.1 112,093 - HP15_108 0.52 +2.2 112,151 + HP15_108 0.57 +0.6 112,175 + HP15_108 0.59 -0.3 112,249 - HP15_108 0.66 -0.3 112,360 + HP15_108 0.76 -0.5 112,378 - HP15_108 0.78 +0.0 112,480 + HP15_108 0.87 +2.5 112,488 - HP15_108 0.88 +0.4
Or see this region's nucleotide sequence