Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3035

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3034 and DvMF_3035 are separated by 780 nucleotidesDvMF_3035 and DvMF_R0078 are separated by 533 nucleotidesDvMF_R0078 and DvMF_3036 are separated by 86 nucleotides DvMF_3034: DvMF_3034 - 5,10-methylenetetrahydrofolate reductase (RefSeq), at 3,828,930 to 3,829,805 _3034 DvMF_3035: DvMF_3035 - glycosyl transferase family 9 (RefSeq), at 3,830,586 to 3,831,611 _3035 DvMF_R0078: DvMF_R0078 - tRNA-Lys (RefSeq), at 3,832,145 to 3,832,220 _R0078 DvMF_3036: DvMF_3036 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 3,832,307 to 3,834,502 _3036 Position (kb) 3830 3831 3832Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3829.740 kb on + strandat 3829.878 kb on + strandat 3829.900 kb on + strandat 3830.122 kb on + strandat 3830.159 kb on + strandat 3830.319 kb on - strandat 3830.339 kb on - strandat 3830.480 kb on - strandat 3830.493 kb on + strandat 3830.530 kb on - strandat 3830.769 kb on + strand, within DvMF_3035at 3830.927 kb on - strand, within DvMF_3035at 3831.043 kb on - strand, within DvMF_3035at 3831.227 kb on + strand, within DvMF_3035at 3831.485 kb on - strand, within DvMF_3035at 3831.583 kb on - strandat 3831.666 kb on - strandat 3831.760 kb on - strandat 3831.946 kb on + strandat 3832.371 kb on - strandat 3832.527 kb on - strand, within DvMF_3036

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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3,829,740 + -0.6
3,829,878 + -0.4
3,829,900 + -0.1
3,830,122 + -0.2
3,830,159 + -0.0
3,830,319 - -1.2
3,830,339 - +0.1
3,830,480 - -0.2
3,830,493 + -0.4
3,830,530 - -0.1
3,830,769 + DvMF_3035 0.18 -1.7
3,830,927 - DvMF_3035 0.33 -4.3
3,831,043 - DvMF_3035 0.45 -4.2
3,831,227 + DvMF_3035 0.62 -3.0
3,831,485 - DvMF_3035 0.88 -4.2
3,831,583 - -1.0
3,831,666 - +0.3
3,831,760 - -0.8
3,831,946 + -0.3
3,832,371 - -0.6
3,832,527 - DvMF_3036 0.10 -0.2

Or see this region's nucleotide sequence