Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2230

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2229 and DvMF_2230 are separated by 271 nucleotidesDvMF_2230 and DvMF_2231 are separated by 155 nucleotidesDvMF_2231 and DvMF_2232 are separated by 102 nucleotides DvMF_2229: DvMF_2229 - hypothetical protein (RefSeq), at 2,790,103 to 2,791,221 _2229 DvMF_2230: DvMF_2230 - hydrolase, TatD family (RefSeq), at 2,791,493 to 2,792,314 _2230 DvMF_2231: DvMF_2231 - protein of unknown function DUF309 (RefSeq), at 2,792,470 to 2,792,892 _2231 DvMF_2232: DvMF_2232 - carbon monoxide dehydrogenase accessory protein CooC, putative (RefSeq), at 2,792,995 to 2,793,846 _2232 Position (kb) 2791 2792 2793Strain fitness (log2 ratio) -2 -1 0 1at 2790.536 kb on + strand, within DvMF_2229at 2790.563 kb on - strand, within DvMF_2229at 2790.767 kb on + strand, within DvMF_2229at 2790.804 kb on - strand, within DvMF_2229at 2790.903 kb on + strand, within DvMF_2229at 2790.913 kb on + strand, within DvMF_2229at 2791.056 kb on - strand, within DvMF_2229at 2791.093 kb on - strand, within DvMF_2229at 2791.276 kb on + strandat 2791.283 kb on + strandat 2791.468 kb on + strandat 2791.607 kb on + strand, within DvMF_2230at 2791.632 kb on + strand, within DvMF_2230at 2791.650 kb on - strand, within DvMF_2230at 2791.672 kb on - strand, within DvMF_2230at 2791.730 kb on + strand, within DvMF_2230at 2791.753 kb on - strand, within DvMF_2230at 2791.801 kb on - strand, within DvMF_2230at 2791.917 kb on + strand, within DvMF_2230at 2792.309 kb on + strandat 2792.473 kb on - strandat 2792.598 kb on - strand, within DvMF_2231at 2792.637 kb on + strand, within DvMF_2231at 2792.823 kb on + strand, within DvMF_2231at 2793.013 kb on - strandat 2793.108 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.291 kb on - strand, within DvMF_2232

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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2,790,536 + DvMF_2229 0.39 -0.3
2,790,563 - DvMF_2229 0.41 +0.2
2,790,767 + DvMF_2229 0.59 -0.3
2,790,804 - DvMF_2229 0.63 -0.1
2,790,903 + DvMF_2229 0.71 -0.2
2,790,913 + DvMF_2229 0.72 -0.1
2,791,056 - DvMF_2229 0.85 -0.4
2,791,093 - DvMF_2229 0.88 -0.5
2,791,276 + +0.1
2,791,283 + -1.2
2,791,468 + -0.0
2,791,607 + DvMF_2230 0.14 -1.7
2,791,632 + DvMF_2230 0.17 -2.0
2,791,650 - DvMF_2230 0.19 -1.7
2,791,672 - DvMF_2230 0.22 -1.8
2,791,730 + DvMF_2230 0.29 -1.8
2,791,753 - DvMF_2230 0.32 -1.5
2,791,801 - DvMF_2230 0.37 -0.9
2,791,917 + DvMF_2230 0.52 -1.0
2,792,309 + -0.2
2,792,473 - -0.1
2,792,598 - DvMF_2231 0.30 +0.6
2,792,637 + DvMF_2231 0.39 +0.8
2,792,823 + DvMF_2231 0.83 -0.6
2,793,013 - -0.0
2,793,108 + DvMF_2232 0.13 -0.1
2,793,276 + DvMF_2232 0.33 -0.2
2,793,276 + DvMF_2232 0.33 -0.6
2,793,276 + DvMF_2232 0.33 -0.1
2,793,284 - DvMF_2232 0.34 -0.4
2,793,284 - DvMF_2232 0.34 -0.2
2,793,284 - DvMF_2232 0.34 -0.0
2,793,284 - DvMF_2232 0.34 -0.1
2,793,284 - DvMF_2232 0.34 +0.0
2,793,284 - DvMF_2232 0.34 -0.9
2,793,284 - DvMF_2232 0.34 -0.7
2,793,291 - DvMF_2232 0.35 -0.3

Or see this region's nucleotide sequence