Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2229 and DvMF_2230 are separated by 271 nucleotides DvMF_2230 and DvMF_2231 are separated by 155 nucleotides DvMF_2231 and DvMF_2232 are separated by 102 nucleotides
DvMF_2229: DvMF_2229 - hypothetical protein (RefSeq), at 2,790,103 to 2,791,221
_2229
DvMF_2230: DvMF_2230 - hydrolase, TatD family (RefSeq), at 2,791,493 to 2,792,314
_2230
DvMF_2231: DvMF_2231 - protein of unknown function DUF309 (RefSeq), at 2,792,470 to 2,792,892
_2231
DvMF_2232: DvMF_2232 - carbon monoxide dehydrogenase accessory protein CooC, putative (RefSeq), at 2,792,995 to 2,793,846
_2232
Position (kb)
2791
2792
2793 Strain fitness (log2 ratio)
-2
-1
0
1 at 2790.536 kb on + strand, within DvMF_2229 at 2790.563 kb on - strand, within DvMF_2229 at 2790.767 kb on + strand, within DvMF_2229 at 2790.804 kb on - strand, within DvMF_2229 at 2790.903 kb on + strand, within DvMF_2229 at 2790.913 kb on + strand, within DvMF_2229 at 2791.056 kb on - strand, within DvMF_2229 at 2791.093 kb on - strand, within DvMF_2229 at 2791.276 kb on + strand at 2791.283 kb on + strand at 2791.468 kb on + strand at 2791.607 kb on + strand, within DvMF_2230 at 2791.632 kb on + strand, within DvMF_2230 at 2791.650 kb on - strand, within DvMF_2230 at 2791.672 kb on - strand, within DvMF_2230 at 2791.730 kb on + strand, within DvMF_2230 at 2791.753 kb on - strand, within DvMF_2230 at 2791.801 kb on - strand, within DvMF_2230 at 2791.917 kb on + strand, within DvMF_2230 at 2792.309 kb on + strand at 2792.473 kb on - strand at 2792.598 kb on - strand, within DvMF_2231 at 2792.637 kb on + strand, within DvMF_2231 at 2792.823 kb on + strand, within DvMF_2231 at 2793.013 kb on - strand at 2793.108 kb on + strand, within DvMF_2232 at 2793.276 kb on + strand, within DvMF_2232 at 2793.276 kb on + strand, within DvMF_2232 at 2793.276 kb on + strand, within DvMF_2232 at 2793.284 kb on - strand, within DvMF_2232 at 2793.284 kb on - strand, within DvMF_2232 at 2793.284 kb on - strand, within DvMF_2232 at 2793.284 kb on - strand, within DvMF_2232 at 2793.284 kb on - strand, within DvMF_2232 at 2793.284 kb on - strand, within DvMF_2232 at 2793.284 kb on - strand, within DvMF_2232 at 2793.291 kb on - strand, within DvMF_2232
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml remove 2,790,536 + DvMF_2229 0.39 -0.3 2,790,563 - DvMF_2229 0.41 +0.2 2,790,767 + DvMF_2229 0.59 -0.3 2,790,804 - DvMF_2229 0.63 -0.1 2,790,903 + DvMF_2229 0.71 -0.2 2,790,913 + DvMF_2229 0.72 -0.1 2,791,056 - DvMF_2229 0.85 -0.4 2,791,093 - DvMF_2229 0.88 -0.5 2,791,276 + +0.1 2,791,283 + -1.2 2,791,468 + -0.0 2,791,607 + DvMF_2230 0.14 -1.7 2,791,632 + DvMF_2230 0.17 -2.0 2,791,650 - DvMF_2230 0.19 -1.7 2,791,672 - DvMF_2230 0.22 -1.8 2,791,730 + DvMF_2230 0.29 -1.8 2,791,753 - DvMF_2230 0.32 -1.5 2,791,801 - DvMF_2230 0.37 -0.9 2,791,917 + DvMF_2230 0.52 -1.0 2,792,309 + -0.2 2,792,473 - -0.1 2,792,598 - DvMF_2231 0.30 +0.6 2,792,637 + DvMF_2231 0.39 +0.8 2,792,823 + DvMF_2231 0.83 -0.6 2,793,013 - -0.0 2,793,108 + DvMF_2232 0.13 -0.1 2,793,276 + DvMF_2232 0.33 -0.2 2,793,276 + DvMF_2232 0.33 -0.6 2,793,276 + DvMF_2232 0.33 -0.1 2,793,284 - DvMF_2232 0.34 -0.4 2,793,284 - DvMF_2232 0.34 -0.2 2,793,284 - DvMF_2232 0.34 -0.0 2,793,284 - DvMF_2232 0.34 -0.1 2,793,284 - DvMF_2232 0.34 +0.0 2,793,284 - DvMF_2232 0.34 -0.9 2,793,284 - DvMF_2232 0.34 -0.7 2,793,291 - DvMF_2232 0.35 -0.3
Or see this region's nucleotide sequence