Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2167

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2166 and DvMF_2167 are separated by 121 nucleotidesDvMF_2167 and DvMF_2168 are separated by 204 nucleotides DvMF_2166: DvMF_2166 - protein of unknown function DUF169 (RefSeq), at 2,702,663 to 2,703,508 _2166 DvMF_2167: DvMF_2167 - transcriptional regulator, MarR family (RefSeq), at 2,703,630 to 2,704,115 _2167 DvMF_2168: DvMF_2168 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,704,320 to 2,704,748 _2168 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -1 0 1at 2702.752 kb on + strand, within DvMF_2166at 2702.880 kb on + strand, within DvMF_2166at 2702.897 kb on + strand, within DvMF_2166at 2703.207 kb on + strand, within DvMF_2166at 2703.429 kb on + strandat 2703.431 kb on + strandat 2703.746 kb on + strand, within DvMF_2167at 2703.870 kb on - strand, within DvMF_2167at 2703.917 kb on + strand, within DvMF_2167at 2704.013 kb on - strand, within DvMF_2167at 2704.177 kb on - strandat 2704.191 kb on + strandat 2704.356 kb on - strandat 2704.400 kb on + strand, within DvMF_2168at 2704.428 kb on + strand, within DvMF_2168at 2704.433 kb on + strand, within DvMF_2168at 2704.433 kb on + strand, within DvMF_2168at 2704.530 kb on + strand, within DvMF_2168at 2704.546 kb on - strand, within DvMF_2168at 2704.750 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
remove
2,702,752 + DvMF_2166 0.11 -0.1
2,702,880 + DvMF_2166 0.26 -0.3
2,702,897 + DvMF_2166 0.28 -0.4
2,703,207 + DvMF_2166 0.64 -0.2
2,703,429 + -0.4
2,703,431 + -0.3
2,703,746 + DvMF_2167 0.24 +0.8
2,703,870 - DvMF_2167 0.49 +1.4
2,703,917 + DvMF_2167 0.59 +1.4
2,704,013 - DvMF_2167 0.79 +1.2
2,704,177 - -0.2
2,704,191 + +0.3
2,704,356 - -0.2
2,704,400 + DvMF_2168 0.19 -0.6
2,704,428 + DvMF_2168 0.25 -1.2
2,704,433 + DvMF_2168 0.26 +0.9
2,704,433 + DvMF_2168 0.26 -0.0
2,704,530 + DvMF_2168 0.49 -0.6
2,704,546 - DvMF_2168 0.53 -0.2
2,704,750 + -0.1

Or see this region's nucleotide sequence