Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1483

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1482 and DvMF_1483 overlap by 4 nucleotidesDvMF_1483 and DvMF_1484 are separated by 397 nucleotides DvMF_1482: DvMF_1482 - inner-membrane translocator (RefSeq), at 1,815,944 to 1,817,026 _1482 DvMF_1483: DvMF_1483 - inner-membrane translocator (RefSeq), at 1,817,023 to 1,817,910 _1483 DvMF_1484: DvMF_1484 - Nitrate reductase (RefSeq), at 1,818,308 to 1,820,527 _1484 Position (kb) 1817 1818Strain fitness (log2 ratio) -1 0 1at 1816.159 kb on + strand, within DvMF_1482at 1816.318 kb on - strand, within DvMF_1482at 1816.349 kb on - strand, within DvMF_1482at 1816.422 kb on + strand, within DvMF_1482at 1816.482 kb on + strand, within DvMF_1482at 1816.596 kb on + strand, within DvMF_1482at 1816.704 kb on - strand, within DvMF_1482at 1816.798 kb on + strand, within DvMF_1482at 1816.943 kb on + strandat 1817.011 kb on + strandat 1817.243 kb on - strand, within DvMF_1483at 1817.465 kb on + strand, within DvMF_1483at 1817.535 kb on + strand, within DvMF_1483at 1817.551 kb on + strand, within DvMF_1483at 1817.662 kb on - strand, within DvMF_1483at 1817.838 kb on - strandat 1817.848 kb on - strandat 1817.878 kb on - strandat 1817.953 kb on + strandat 1818.139 kb on + strandat 1818.185 kb on - strandat 1818.228 kb on - strandat 1818.511 kb on - strandat 1818.530 kb on + strand, within DvMF_1484at 1818.582 kb on - strand, within DvMF_1484at 1818.652 kb on - strand, within DvMF_1484at 1818.822 kb on - strand, within DvMF_1484

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,816,159 + DvMF_1482 0.20 -0.5
1,816,318 - DvMF_1482 0.35 -0.7
1,816,349 - DvMF_1482 0.37 -0.1
1,816,422 + DvMF_1482 0.44 -0.4
1,816,482 + DvMF_1482 0.50 -0.3
1,816,596 + DvMF_1482 0.60 -0.6
1,816,704 - DvMF_1482 0.70 -0.0
1,816,798 + DvMF_1482 0.79 -0.9
1,816,943 + -0.2
1,817,011 + -0.4
1,817,243 - DvMF_1483 0.25 -0.3
1,817,465 + DvMF_1483 0.50 -0.4
1,817,535 + DvMF_1483 0.58 -0.2
1,817,551 + DvMF_1483 0.59 +0.0
1,817,662 - DvMF_1483 0.72 -0.0
1,817,838 - -0.1
1,817,848 - -0.5
1,817,878 - -0.1
1,817,953 + -0.4
1,818,139 + +0.3
1,818,185 - +0.3
1,818,228 - -0.2
1,818,511 - -0.9
1,818,530 + DvMF_1484 0.10 -0.2
1,818,582 - DvMF_1484 0.12 -0.4
1,818,652 - DvMF_1484 0.15 -0.6
1,818,822 - DvMF_1484 0.23 -0.3

Or see this region's nucleotide sequence