Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1480

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1478 and DvMF_1479 are separated by 103 nucleotidesDvMF_1479 and DvMF_1480 overlap by 1 nucleotidesDvMF_1480 and DvMF_1481 overlap by 8 nucleotidesDvMF_1481 and DvMF_1482 overlap by 4 nucleotides DvMF_1478: DvMF_1478 - Extracellular ligand-binding receptor (RefSeq), at 1,812,242 to 1,813,459 _1478 DvMF_1479: DvMF_1479 - transcriptional regulator, GntR family (RefSeq), at 1,813,563 to 1,814,333 _1479 DvMF_1480: DvMF_1480 - ABC transporter related (RefSeq), at 1,814,333 to 1,815,175 _1480 DvMF_1481: DvMF_1481 - ABC transporter related (RefSeq), at 1,815,168 to 1,815,947 _1481 DvMF_1482: DvMF_1482 - inner-membrane translocator (RefSeq), at 1,815,944 to 1,817,026 _1482 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -1 0 1at 1813.489 kb on - strandat 1813.635 kb on + strandat 1813.706 kb on - strand, within DvMF_1479at 1813.812 kb on + strand, within DvMF_1479at 1814.195 kb on + strand, within DvMF_1479at 1814.314 kb on + strandat 1814.658 kb on - strand, within DvMF_1480at 1814.708 kb on + strand, within DvMF_1480at 1815.001 kb on - strand, within DvMF_1480at 1815.039 kb on + strand, within DvMF_1480at 1815.205 kb on - strandat 1815.218 kb on + strandat 1815.218 kb on + strandat 1815.365 kb on + strand, within DvMF_1481at 1815.492 kb on - strand, within DvMF_1481at 1815.612 kb on - strand, within DvMF_1481at 1815.646 kb on + strand, within DvMF_1481at 1815.690 kb on + strand, within DvMF_1481at 1815.813 kb on - strand, within DvMF_1481at 1815.859 kb on + strand, within DvMF_1481at 1816.159 kb on + strand, within DvMF_1482

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,813,489 - +0.1
1,813,635 + -0.7
1,813,706 - DvMF_1479 0.19 -1.3
1,813,812 + DvMF_1479 0.32 -1.0
1,814,195 + DvMF_1479 0.82 -0.9
1,814,314 + -0.2
1,814,658 - DvMF_1480 0.39 -0.1
1,814,708 + DvMF_1480 0.44 -0.8
1,815,001 - DvMF_1480 0.79 -0.7
1,815,039 + DvMF_1480 0.84 +0.1
1,815,205 - -0.0
1,815,218 + -0.1
1,815,218 + -0.3
1,815,365 + DvMF_1481 0.25 -0.1
1,815,492 - DvMF_1481 0.42 -0.7
1,815,612 - DvMF_1481 0.57 -0.2
1,815,646 + DvMF_1481 0.61 -0.6
1,815,690 + DvMF_1481 0.67 -0.8
1,815,813 - DvMF_1481 0.83 -0.2
1,815,859 + DvMF_1481 0.89 -0.7
1,816,159 + DvMF_1482 0.20 -0.5

Or see this region's nucleotide sequence