Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1443

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1441 and rpmE are separated by 421 nucleotidesrpmE and DvMF_1443 are separated by 112 nucleotidesDvMF_1443 and prfA are separated by 3 nucleotides DvMF_1441: DvMF_1441 - hemolysin A (RefSeq), at 1,762,881 to 1,763,711 _1441 DvMF_1442: rpmE - 50S ribosomal protein L31 (RefSeq), at 1,764,133 to 1,764,348 rpmE DvMF_1443: DvMF_1443 - protein of unknown function DUF1385 (RefSeq), at 1,764,461 to 1,765,540 _1443 DvMF_1444: prfA - peptide chain release factor 1 (RefSeq), at 1,765,544 to 1,766,617 prfA Position (kb) 1764 1765 1766Strain fitness (log2 ratio) -1 0 1at 1763.572 kb on + strand, within DvMF_1441at 1763.707 kb on - strandat 1764.053 kb on - strandat 1765.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,763,572 + DvMF_1441 0.83 -0.0
1,763,707 - -0.7
1,764,053 - -1.4
1,765,535 + -0.3

Or see this region's nucleotide sequence