Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1441

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1440 and DvMF_1441 are separated by 124 nucleotidesDvMF_1441 and rpmE are separated by 421 nucleotidesrpmE and DvMF_1443 are separated by 112 nucleotides DvMF_1440: DvMF_1440 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,761,740 to 1,762,756 _1440 DvMF_1441: DvMF_1441 - hemolysin A (RefSeq), at 1,762,881 to 1,763,711 _1441 DvMF_1442: rpmE - 50S ribosomal protein L31 (RefSeq), at 1,764,133 to 1,764,348 rpmE DvMF_1443: DvMF_1443 - protein of unknown function DUF1385 (RefSeq), at 1,764,461 to 1,765,540 _1443 Position (kb) 1762 1763 1764Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1761.970 kb on - strand, within DvMF_1440at 1762.063 kb on - strand, within DvMF_1440at 1762.248 kb on - strand, within DvMF_1440at 1762.258 kb on + strand, within DvMF_1440at 1762.258 kb on + strand, within DvMF_1440at 1762.266 kb on - strand, within DvMF_1440at 1762.336 kb on - strand, within DvMF_1440at 1762.428 kb on - strand, within DvMF_1440at 1762.594 kb on + strand, within DvMF_1440at 1762.869 kb on + strandat 1762.961 kb on - strandat 1763.293 kb on + strand, within DvMF_1441at 1763.293 kb on + strand, within DvMF_1441at 1763.301 kb on - strand, within DvMF_1441at 1763.313 kb on + strand, within DvMF_1441at 1763.572 kb on + strand, within DvMF_1441at 1763.707 kb on - strandat 1764.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,761,970 - DvMF_1440 0.23 -2.7
1,762,063 - DvMF_1440 0.32 -2.9
1,762,248 - DvMF_1440 0.50 -2.6
1,762,258 + DvMF_1440 0.51 -1.9
1,762,258 + DvMF_1440 0.51 -3.3
1,762,266 - DvMF_1440 0.52 -4.2
1,762,336 - DvMF_1440 0.59 -2.6
1,762,428 - DvMF_1440 0.68 -2.9
1,762,594 + DvMF_1440 0.84 -4.1
1,762,869 + -1.8
1,762,961 - -0.4
1,763,293 + DvMF_1441 0.50 -1.2
1,763,293 + DvMF_1441 0.50 -0.2
1,763,301 - DvMF_1441 0.51 -0.6
1,763,313 + DvMF_1441 0.52 -0.6
1,763,572 + DvMF_1441 0.83 -0.0
1,763,707 - -0.7
1,764,053 - -1.4

Or see this region's nucleotide sequence