Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1168 and DvMF_1169 are separated by 228 nucleotides DvMF_1169 and DvMF_1170 are separated by 410 nucleotides
DvMF_1168: DvMF_1168 - Diaminopimelate epimerase-like protein (RefSeq), at 1,442,677 to 1,443,600
_1168
DvMF_1169: DvMF_1169 - hypothetical protein (RefSeq), at 1,443,829 to 1,446,888
_1169
DvMF_1170: DvMF_1170 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,447,299 to 1,448,294
_1170
Position (kb)
1443
1444
1445
1446
1447 Strain fitness (log2 ratio)
-1
0
1 at 1443.017 kb on - strand, within DvMF_1168 at 1443.215 kb on + strand, within DvMF_1168 at 1443.255 kb on - strand, within DvMF_1168 at 1443.255 kb on - strand, within DvMF_1168 at 1443.264 kb on - strand, within DvMF_1168 at 1443.949 kb on - strand at 1444.036 kb on - strand at 1444.087 kb on + strand at 1444.087 kb on + strand at 1444.087 kb on + strand at 1444.803 kb on + strand, within DvMF_1169 at 1444.837 kb on - strand, within DvMF_1169 at 1444.867 kb on - strand, within DvMF_1169 at 1445.077 kb on + strand, within DvMF_1169 at 1445.086 kb on - strand, within DvMF_1169 at 1445.160 kb on + strand, within DvMF_1169 at 1445.178 kb on + strand, within DvMF_1169 at 1445.519 kb on + strand, within DvMF_1169 at 1445.548 kb on + strand, within DvMF_1169 at 1445.585 kb on + strand, within DvMF_1169 at 1445.593 kb on - strand, within DvMF_1169 at 1445.600 kb on + strand, within DvMF_1169 at 1445.603 kb on - strand, within DvMF_1169 at 1445.669 kb on + strand, within DvMF_1169 at 1445.677 kb on - strand, within DvMF_1169 at 1445.811 kb on - strand, within DvMF_1169 at 1445.913 kb on + strand, within DvMF_1169 at 1446.145 kb on + strand, within DvMF_1169 at 1446.153 kb on - strand, within DvMF_1169 at 1446.358 kb on - strand, within DvMF_1169 at 1446.479 kb on - strand, within DvMF_1169 at 1446.697 kb on + strand at 1446.726 kb on - strand at 1446.795 kb on - strand at 1447.093 kb on - strand at 1447.238 kb on + strand at 1447.246 kb on - strand at 1447.246 kb on - strand at 1447.519 kb on - strand, within DvMF_1170 at 1447.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml remove 1,443,017 - DvMF_1168 0.37 -0.3 1,443,215 + DvMF_1168 0.58 -0.5 1,443,255 - DvMF_1168 0.63 -0.6 1,443,255 - DvMF_1168 0.63 -0.1 1,443,264 - DvMF_1168 0.64 -0.3 1,443,949 - +0.1 1,444,036 - +0.1 1,444,087 + -0.5 1,444,087 + +0.3 1,444,087 + -0.3 1,444,803 + DvMF_1169 0.32 -0.4 1,444,837 - DvMF_1169 0.33 +0.4 1,444,867 - DvMF_1169 0.34 -0.5 1,445,077 + DvMF_1169 0.41 +0.2 1,445,086 - DvMF_1169 0.41 +0.4 1,445,160 + DvMF_1169 0.43 +0.0 1,445,178 + DvMF_1169 0.44 -0.1 1,445,519 + DvMF_1169 0.55 -0.4 1,445,548 + DvMF_1169 0.56 -0.4 1,445,585 + DvMF_1169 0.57 -0.3 1,445,593 - DvMF_1169 0.58 -0.2 1,445,600 + DvMF_1169 0.58 -0.7 1,445,603 - DvMF_1169 0.58 -0.2 1,445,669 + DvMF_1169 0.60 -0.2 1,445,677 - DvMF_1169 0.60 -0.2 1,445,811 - DvMF_1169 0.65 +0.1 1,445,913 + DvMF_1169 0.68 -0.4 1,446,145 + DvMF_1169 0.76 -0.1 1,446,153 - DvMF_1169 0.76 -0.2 1,446,358 - DvMF_1169 0.83 -0.6 1,446,479 - DvMF_1169 0.87 +0.3 1,446,697 + -0.1 1,446,726 - -0.1 1,446,795 - -0.3 1,447,093 - -0.3 1,447,238 + -0.0 1,447,246 - -0.3 1,447,246 - -0.4 1,447,519 - DvMF_1170 0.22 -0.2 1,447,741 + +0.5
Or see this region's nucleotide sequence