Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1095

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1094 and DvMF_1095 are separated by 333 nucleotidesDvMF_1095 and DvMF_1096 are separated by 283 nucleotides DvMF_1094: DvMF_1094 - putative phage repressor (RefSeq), at 1,335,980 to 1,336,729 _1094 DvMF_1095: DvMF_1095 - hypothetical protein (RefSeq), at 1,337,063 to 1,337,449 _1095 DvMF_1096: DvMF_1096 - multi-sensor hybrid histidine kinase (RefSeq), at 1,337,733 to 1,342,379 _1096 Position (kb) 1337 1338Strain fitness (log2 ratio) -1 0 1at 1336.922 kb on + strandat 1336.944 kb on + strandat 1336.952 kb on - strandat 1337.336 kb on - strand, within DvMF_1095at 1337.444 kb on - strandat 1337.590 kb on - strandat 1337.590 kb on - strandat 1337.672 kb on - strandat 1337.672 kb on - strandat 1337.672 kb on - strandat 1337.800 kb on - strandat 1337.998 kb on - strandat 1338.148 kb on - strandat 1338.294 kb on - strand, within DvMF_1096at 1338.314 kb on + strand, within DvMF_1096at 1338.341 kb on + strand, within DvMF_1096at 1338.349 kb on - strand, within DvMF_1096

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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1,336,922 + -0.2
1,336,944 + -0.3
1,336,952 - -0.4
1,337,336 - DvMF_1095 0.71 -0.6
1,337,444 - +0.2
1,337,590 - +1.0
1,337,590 - -1.2
1,337,672 - +0.1
1,337,672 - -0.1
1,337,672 - -0.5
1,337,800 - -0.3
1,337,998 - -0.1
1,338,148 - -0.3
1,338,294 - DvMF_1096 0.12 -0.3
1,338,314 + DvMF_1096 0.13 -0.7
1,338,341 + DvMF_1096 0.13 -0.1
1,338,349 - DvMF_1096 0.13 -0.1

Or see this region's nucleotide sequence