Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0170 and DvMF_0171 are separated by 437 nucleotides DvMF_0171 and DvMF_0172 are separated by 113 nucleotides DvMF_0172 and coaD overlap by 25 nucleotides
DvMF_0170: DvMF_0170 - hypothetical protein (RefSeq), at 186,210 to 186,866
_0170
DvMF_0171: DvMF_0171 - beta-lactamase domain protein (RefSeq), at 187,304 to 188,914
_0171
DvMF_0172: DvMF_0172 - methyltransferase (RefSeq), at 189,028 to 189,600
_0172
DvMF_0173: coaD - phosphopantetheine adenylyltransferase (RefSeq), at 189,576 to 190,337
coaD
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1 at 186.365 kb on + strand, within DvMF_0170 at 186.367 kb on - strand, within DvMF_0170 at 186.411 kb on + strand, within DvMF_0170 at 186.851 kb on + strand at 187.271 kb on + strand at 187.604 kb on - strand, within DvMF_0171 at 188.072 kb on + strand, within DvMF_0171 at 188.074 kb on + strand, within DvMF_0171 at 188.080 kb on - strand, within DvMF_0171 at 188.460 kb on + strand, within DvMF_0171 at 188.468 kb on - strand, within DvMF_0171 at 188.564 kb on - strand, within DvMF_0171 at 188.578 kb on + strand, within DvMF_0171 at 188.597 kb on - strand, within DvMF_0171 at 188.655 kb on + strand, within DvMF_0171 at 188.679 kb on + strand, within DvMF_0171 at 188.714 kb on + strand, within DvMF_0171 at 189.163 kb on - strand, within DvMF_0172 at 189.187 kb on - strand, within DvMF_0172 at 189.297 kb on + strand, within DvMF_0172 at 189.301 kb on - strand, within DvMF_0172
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml remove 186,365 + DvMF_0170 0.24 -1.6 186,367 - DvMF_0170 0.24 -1.3 186,411 + DvMF_0170 0.31 -1.2 186,851 + -1.9 187,271 + -0.4 187,604 - DvMF_0171 0.19 -0.1 188,072 + DvMF_0171 0.48 -0.5 188,074 + DvMF_0171 0.48 -0.7 188,080 - DvMF_0171 0.48 -0.3 188,460 + DvMF_0171 0.72 -0.6 188,468 - DvMF_0171 0.72 -0.2 188,564 - DvMF_0171 0.78 -0.5 188,578 + DvMF_0171 0.79 -0.5 188,597 - DvMF_0171 0.80 -0.8 188,655 + DvMF_0171 0.84 +0.6 188,679 + DvMF_0171 0.85 -1.1 188,714 + DvMF_0171 0.88 -1.4 189,163 - DvMF_0172 0.24 +0.7 189,187 - DvMF_0172 0.28 +0.7 189,297 + DvMF_0172 0.47 -0.4 189,301 - DvMF_0172 0.48 +0.7
Or see this region's nucleotide sequence