Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0056

Experiment: MoYLS4 with Chloramphenicol 0.003125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0055 and DvMF_0056 overlap by 4 nucleotidesDvMF_0056 and DvMF_0057 overlap by 1 nucleotidesDvMF_0057 and DvMF_0058 are separated by 2 nucleotides DvMF_0055: DvMF_0055 - ATP-dependent metalloprotease FtsH (RefSeq), at 71,779 to 73,794 _0055 DvMF_0056: DvMF_0056 - dihydropteroate synthase (RefSeq), at 73,791 to 74,789 _0056 DvMF_0057: DvMF_0057 - protein of unknown function DUF147 (RefSeq), at 74,789 to 75,532 _0057 DvMF_0058: DvMF_0058 - YbbR family protein (RefSeq), at 75,535 to 76,434 _0058 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1at 74.836 kb on - strandat 74.865 kb on - strand, within DvMF_0057at 75.055 kb on - strand, within DvMF_0057at 75.180 kb on + strand, within DvMF_0057at 75.244 kb on + strand, within DvMF_0057at 75.494 kb on + strandat 75.567 kb on - strandat 75.743 kb on - strand, within DvMF_0058

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloramphenicol 0.003125 mg/ml
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74,836 - -1.8
74,865 - DvMF_0057 0.10 +0.1
75,055 - DvMF_0057 0.36 -2.2
75,180 + DvMF_0057 0.53 -1.6
75,244 + DvMF_0057 0.61 -1.4
75,494 + -1.4
75,567 - +0.2
75,743 - DvMF_0058 0.23 -2.4

Or see this region's nucleotide sequence