Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2767

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2766 and Shewana3_2767 are separated by 100 nucleotidesShewana3_2767 and Shewana3_2768 overlap by 1 nucleotidesShewana3_2768 and Shewana3_2769 are separated by 64 nucleotides Shewana3_2766: Shewana3_2766 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 3,304,349 to 3,305,251 _2766 Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503 _2767 Shewana3_2768: Shewana3_2768 - enoyl-CoA hydratase (RefSeq), at 3,306,503 to 3,307,276 _2768 Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data), at 3,307,341 to 3,308,498 _2769 Position (kb) 3305 3306 3307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3304.841 kb on + strand, within Shewana3_2766at 3304.849 kb on - strand, within Shewana3_2766at 3304.907 kb on + strand, within Shewana3_2766at 3304.908 kb on + strand, within Shewana3_2766at 3304.980 kb on - strand, within Shewana3_2766at 3305.067 kb on - strand, within Shewana3_2766at 3305.110 kb on + strand, within Shewana3_2766at 3305.143 kb on - strand, within Shewana3_2766at 3305.247 kb on - strandat 3305.416 kb on - strandat 3305.471 kb on - strand, within Shewana3_2767at 3305.510 kb on + strand, within Shewana3_2767at 3305.675 kb on - strand, within Shewana3_2767at 3305.704 kb on - strand, within Shewana3_2767at 3305.873 kb on - strand, within Shewana3_2767at 3305.978 kb on + strand, within Shewana3_2767at 3305.986 kb on - strand, within Shewana3_2767at 3306.124 kb on + strand, within Shewana3_2767at 3306.124 kb on + strand, within Shewana3_2767at 3306.299 kb on + strand, within Shewana3_2767at 3306.522 kb on + strandat 3306.560 kb on - strandat 3306.785 kb on - strand, within Shewana3_2768at 3306.800 kb on - strand, within Shewana3_2768at 3306.826 kb on - strand, within Shewana3_2768at 3306.837 kb on - strand, within Shewana3_2768at 3306.874 kb on - strand, within Shewana3_2768at 3306.879 kb on - strand, within Shewana3_2768at 3306.882 kb on + strand, within Shewana3_2768at 3306.951 kb on - strand, within Shewana3_2768at 3307.167 kb on + strand, within Shewana3_2768at 3307.176 kb on - strand, within Shewana3_2768at 3307.208 kb on - strandat 3307.256 kb on + strandat 3307.320 kb on + strandat 3307.458 kb on + strand, within Shewana3_2769

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,304,841 + Shewana3_2766 0.54 -0.4
3,304,849 - Shewana3_2766 0.55 -0.5
3,304,907 + Shewana3_2766 0.62 +0.5
3,304,908 + Shewana3_2766 0.62 -0.5
3,304,980 - Shewana3_2766 0.70 -0.2
3,305,067 - Shewana3_2766 0.80 -0.3
3,305,110 + Shewana3_2766 0.84 +0.9
3,305,143 - Shewana3_2766 0.88 -1.0
3,305,247 - +0.2
3,305,416 - -0.3
3,305,471 - Shewana3_2767 0.10 -3.2
3,305,510 + Shewana3_2767 0.14 -2.2
3,305,675 - Shewana3_2767 0.28 -1.4
3,305,704 - Shewana3_2767 0.31 -3.4
3,305,873 - Shewana3_2767 0.45 -1.3
3,305,978 + Shewana3_2767 0.54 -0.8
3,305,986 - Shewana3_2767 0.55 -3.9
3,306,124 + Shewana3_2767 0.67 -4.5
3,306,124 + Shewana3_2767 0.67 -1.9
3,306,299 + Shewana3_2767 0.82 -1.4
3,306,522 + -0.3
3,306,560 - -0.8
3,306,785 - Shewana3_2768 0.36 -0.0
3,306,800 - Shewana3_2768 0.38 -0.5
3,306,826 - Shewana3_2768 0.42 -0.0
3,306,837 - Shewana3_2768 0.43 +0.5
3,306,874 - Shewana3_2768 0.48 +0.5
3,306,879 - Shewana3_2768 0.49 -0.2
3,306,882 + Shewana3_2768 0.49 +0.1
3,306,951 - Shewana3_2768 0.58 -0.2
3,307,167 + Shewana3_2768 0.86 -1.3
3,307,176 - Shewana3_2768 0.87 -1.4
3,307,208 - +0.6
3,307,256 + +0.5
3,307,320 + +0.1
3,307,458 + Shewana3_2769 0.10 +0.2

Or see this region's nucleotide sequence