Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2294

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2293 and Shewana3_2294 are separated by 104 nucleotidesShewana3_2294 and Shewana3_2295 overlap by 8 nucleotides Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078 _2293 Shewana3_2294: Shewana3_2294 - hypothetical protein (RefSeq), at 2,758,183 to 2,758,470 _2294 Shewana3_2295: Shewana3_2295 - L-serine ammonia-lyase (RefSeq), at 2,758,463 to 2,759,839 _2295 Position (kb) 2758 2759Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2757.364 kb on - strand, within Shewana3_2293at 2757.428 kb on - strand, within Shewana3_2293at 2757.577 kb on - strand, within Shewana3_2293at 2757.625 kb on + strand, within Shewana3_2293at 2757.702 kb on - strand, within Shewana3_2293at 2757.728 kb on + strand, within Shewana3_2293at 2757.890 kb on + strand, within Shewana3_2293at 2758.050 kb on - strandat 2758.141 kb on - strandat 2758.607 kb on - strand, within Shewana3_2295at 2758.617 kb on - strand, within Shewana3_2295at 2758.754 kb on - strand, within Shewana3_2295at 2758.759 kb on - strand, within Shewana3_2295at 2759.061 kb on + strand, within Shewana3_2295at 2759.164 kb on + strand, within Shewana3_2295at 2759.373 kb on - strand, within Shewana3_2295

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,757,364 - Shewana3_2293 0.31 -0.4
2,757,428 - Shewana3_2293 0.37 -0.6
2,757,577 - Shewana3_2293 0.51 -1.3
2,757,625 + Shewana3_2293 0.56 +0.3
2,757,702 - Shewana3_2293 0.63 +0.5
2,757,728 + Shewana3_2293 0.66 +1.1
2,757,890 + Shewana3_2293 0.82 -0.3
2,758,050 - +0.1
2,758,141 - +0.1
2,758,607 - Shewana3_2295 0.10 -2.5
2,758,617 - Shewana3_2295 0.11 -1.9
2,758,754 - Shewana3_2295 0.21 -4.4
2,758,759 - Shewana3_2295 0.21 -4.0
2,759,061 + Shewana3_2295 0.43 -1.7
2,759,164 + Shewana3_2295 0.51 -1.3
2,759,373 - Shewana3_2295 0.66 -2.9

Or see this region's nucleotide sequence