Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2291

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2290 and Shewana3_2291 are separated by 127 nucleotidesShewana3_2291 and Shewana3_2292 are separated by 596 nucleotides Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432 _2290 Shewana3_2291: Shewana3_2291 - acylphosphatase (RefSeq), at 2,755,560 to 2,755,832 _2291 Shewana3_2292: Shewana3_2292 - hypothetical protein (RefSeq), at 2,756,429 to 2,756,968 _2292 Position (kb) 2755 2756Strain fitness (log2 ratio) -1 0 1at 2754.853 kb on - strand, within Shewana3_2290at 2754.863 kb on + strand, within Shewana3_2290at 2754.871 kb on - strand, within Shewana3_2290at 2754.871 kb on - strand, within Shewana3_2290at 2755.164 kb on + strand, within Shewana3_2290at 2755.256 kb on + strand, within Shewana3_2290at 2755.258 kb on + strand, within Shewana3_2290at 2755.368 kb on + strandat 2755.613 kb on + strand, within Shewana3_2291at 2755.641 kb on - strand, within Shewana3_2291at 2756.335 kb on + strandat 2756.581 kb on - strand, within Shewana3_2292at 2756.713 kb on - strand, within Shewana3_2292at 2756.748 kb on + strand, within Shewana3_2292at 2756.756 kb on - strand, within Shewana3_2292

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,754,853 - Shewana3_2290 0.43 +0.0
2,754,863 + Shewana3_2290 0.44 -0.0
2,754,871 - Shewana3_2290 0.45 +0.3
2,754,871 - Shewana3_2290 0.45 -1.6
2,755,164 + Shewana3_2290 0.74 -0.8
2,755,256 + Shewana3_2290 0.83 -0.9
2,755,258 + Shewana3_2290 0.83 -1.3
2,755,368 + -0.6
2,755,613 + Shewana3_2291 0.19 -1.6
2,755,641 - Shewana3_2291 0.30 +0.8
2,756,335 + +0.3
2,756,581 - Shewana3_2292 0.28 -1.4
2,756,713 - Shewana3_2292 0.53 +0.8
2,756,748 + Shewana3_2292 0.59 +0.5
2,756,756 - Shewana3_2292 0.61 +0.8

Or see this region's nucleotide sequence