Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1889 and Shewana3_1890 are separated by 123 nucleotides Shewana3_1890 and Shewana3_1891 overlap by 50 nucleotides Shewana3_1891 and Shewana3_1892 are separated by 312 nucleotides
Shewana3_1889: Shewana3_1889 - peptidoglycan binding domain-containing protein (RefSeq), at 2,238,829 to 2,240,505
_1889
Shewana3_1890: Shewana3_1890 - hypothetical protein (RefSeq), at 2,240,629 to 2,241,177
_1890
Shewana3_1891: Shewana3_1891 - hypothetical protein (RefSeq), at 2,241,128 to 2,241,562
_1891
Shewana3_1892: Shewana3_1892 - 50S ribosomal protein L25P (RefSeq), at 2,241,875 to 2,242,162
_1892
Position (kb) 2240
2241
2242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2239.779 kb on + strand, within Shewana3_1889 at 2240.645 kb on - strand at 2240.645 kb on - strand at 2240.686 kb on - strand, within Shewana3_1890 at 2240.992 kb on + strand, within Shewana3_1890 at 2241.071 kb on + strand, within Shewana3_1890 at 2241.481 kb on - strand, within Shewana3_1891 at 2241.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,239,779 + Shewana3_1889 0.57 +0.2 2,240,645 - +2.7 2,240,645 - -0.1 2,240,686 - Shewana3_1890 0.10 -2.8 2,240,992 + Shewana3_1890 0.66 -0.9 2,241,071 + Shewana3_1890 0.81 -1.1 2,241,481 - Shewana3_1891 0.81 +0.3 2,241,616 + -1.2
Or see this region's nucleotide sequence