Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1750 and Shewana3_1751 are separated by 149 nucleotides Shewana3_1751 and clpS are separated by 193 nucleotides clpS and Shewana3_1753 are separated by 42 nucleotides Shewana3_1753 and infA are separated by 103 nucleotides infA and Shewana3_1755 are separated by 82 nucleotides
Shewana3_1750: Shewana3_1750 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 2,063,884 to 2,066,109
_1750
Shewana3_1751: Shewana3_1751 - cold-shock DNA-binding protein family protein (RefSeq), at 2,066,259 to 2,066,465
_1751
Shewana3_1752: clpS - ATP-dependent Clp protease adaptor protein ClpS (RefSeq), at 2,066,659 to 2,066,967
clpS
Shewana3_1753: Shewana3_1753 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 2,067,010 to 2,069,277
_1753
Shewana3_1754: infA - translation initiation factor IF-1 (RefSeq), at 2,069,381 to 2,069,599
infA
Shewana3_1755: Shewana3_1755 - arginyl-tRNA-protein transferase (RefSeq), at 2,069,682 to 2,070,398
_1755
Position (kb)
2067
2068
2069
2070 Strain fitness (log2 ratio)
-2
-1
0
1 at 2066.102 kb on - strand at 2066.179 kb on - strand at 2066.368 kb on + strand, within Shewana3_1751 at 2066.376 kb on - strand, within Shewana3_1751 at 2066.522 kb on - strand at 2066.548 kb on - strand at 2066.946 kb on + strand at 2066.981 kb on + strand at 2067.468 kb on - strand, within Shewana3_1753 at 2067.615 kb on - strand, within Shewana3_1753 at 2068.164 kb on - strand, within Shewana3_1753 at 2068.353 kb on - strand, within Shewana3_1753 at 2068.432 kb on - strand, within Shewana3_1753 at 2068.471 kb on + strand, within Shewana3_1753 at 2068.474 kb on + strand, within Shewana3_1753 at 2068.499 kb on + strand, within Shewana3_1753 at 2068.621 kb on + strand, within Shewana3_1753 at 2068.865 kb on + strand, within Shewana3_1753 at 2069.714 kb on - strand at 2069.744 kb on - strand at 2069.846 kb on + strand, within Shewana3_1755 at 2069.918 kb on - strand, within Shewana3_1755 at 2070.092 kb on + strand, within Shewana3_1755 at 2070.092 kb on + strand, within Shewana3_1755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,066,102 - -0.1 2,066,179 - -0.1 2,066,368 + Shewana3_1751 0.53 -0.9 2,066,376 - Shewana3_1751 0.57 -2.3 2,066,522 - -2.5 2,066,548 - -1.9 2,066,946 + -0.4 2,066,981 + -1.5 2,067,468 - Shewana3_1753 0.20 -1.4 2,067,615 - Shewana3_1753 0.27 -0.2 2,068,164 - Shewana3_1753 0.51 -0.4 2,068,353 - Shewana3_1753 0.59 +0.5 2,068,432 - Shewana3_1753 0.63 -1.6 2,068,471 + Shewana3_1753 0.64 +0.1 2,068,474 + Shewana3_1753 0.65 -1.2 2,068,499 + Shewana3_1753 0.66 -0.9 2,068,621 + Shewana3_1753 0.71 -0.8 2,068,865 + Shewana3_1753 0.82 -0.1 2,069,714 - -0.4 2,069,744 - +1.2 2,069,846 + Shewana3_1755 0.23 +0.7 2,069,918 - Shewana3_1755 0.33 -0.6 2,070,092 + Shewana3_1755 0.57 -0.0 2,070,092 + Shewana3_1755 0.57 +0.2
Or see this region's nucleotide sequence