Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1753

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1750 and Shewana3_1751 are separated by 149 nucleotidesShewana3_1751 and clpS are separated by 193 nucleotidesclpS and Shewana3_1753 are separated by 42 nucleotidesShewana3_1753 and infA are separated by 103 nucleotidesinfA and Shewana3_1755 are separated by 82 nucleotides Shewana3_1750: Shewana3_1750 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 2,063,884 to 2,066,109 _1750 Shewana3_1751: Shewana3_1751 - cold-shock DNA-binding protein family protein (RefSeq), at 2,066,259 to 2,066,465 _1751 Shewana3_1752: clpS - ATP-dependent Clp protease adaptor protein ClpS (RefSeq), at 2,066,659 to 2,066,967 clpS Shewana3_1753: Shewana3_1753 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 2,067,010 to 2,069,277 _1753 Shewana3_1754: infA - translation initiation factor IF-1 (RefSeq), at 2,069,381 to 2,069,599 infA Shewana3_1755: Shewana3_1755 - arginyl-tRNA-protein transferase (RefSeq), at 2,069,682 to 2,070,398 _1755 Position (kb) 2067 2068 2069 2070Strain fitness (log2 ratio) -2 -1 0 1at 2066.102 kb on - strandat 2066.179 kb on - strandat 2066.368 kb on + strand, within Shewana3_1751at 2066.376 kb on - strand, within Shewana3_1751at 2066.522 kb on - strandat 2066.548 kb on - strandat 2066.946 kb on + strandat 2066.981 kb on + strandat 2067.468 kb on - strand, within Shewana3_1753at 2067.615 kb on - strand, within Shewana3_1753at 2068.164 kb on - strand, within Shewana3_1753at 2068.353 kb on - strand, within Shewana3_1753at 2068.432 kb on - strand, within Shewana3_1753at 2068.471 kb on + strand, within Shewana3_1753at 2068.474 kb on + strand, within Shewana3_1753at 2068.499 kb on + strand, within Shewana3_1753at 2068.621 kb on + strand, within Shewana3_1753at 2068.865 kb on + strand, within Shewana3_1753at 2069.714 kb on - strandat 2069.744 kb on - strandat 2069.846 kb on + strand, within Shewana3_1755at 2069.918 kb on - strand, within Shewana3_1755at 2070.092 kb on + strand, within Shewana3_1755at 2070.092 kb on + strand, within Shewana3_1755

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,066,102 - -0.1
2,066,179 - -0.1
2,066,368 + Shewana3_1751 0.53 -0.9
2,066,376 - Shewana3_1751 0.57 -2.3
2,066,522 - -2.5
2,066,548 - -1.9
2,066,946 + -0.4
2,066,981 + -1.5
2,067,468 - Shewana3_1753 0.20 -1.4
2,067,615 - Shewana3_1753 0.27 -0.2
2,068,164 - Shewana3_1753 0.51 -0.4
2,068,353 - Shewana3_1753 0.59 +0.5
2,068,432 - Shewana3_1753 0.63 -1.6
2,068,471 + Shewana3_1753 0.64 +0.1
2,068,474 + Shewana3_1753 0.65 -1.2
2,068,499 + Shewana3_1753 0.66 -0.9
2,068,621 + Shewana3_1753 0.71 -0.8
2,068,865 + Shewana3_1753 0.82 -0.1
2,069,714 - -0.4
2,069,744 - +1.2
2,069,846 + Shewana3_1755 0.23 +0.7
2,069,918 - Shewana3_1755 0.33 -0.6
2,070,092 + Shewana3_1755 0.57 -0.0
2,070,092 + Shewana3_1755 0.57 +0.2

Or see this region's nucleotide sequence