Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1684

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1683 and Shewana3_1684 are separated by 199 nucleotidesShewana3_1684 and Shewana3_1685 are separated by 71 nucleotides Shewana3_1683: Shewana3_1683 - LysR family transcriptional regulator (RefSeq), at 1,978,257 to 1,979,156 _1683 Shewana3_1684: Shewana3_1684 - hypothetical protein (RefSeq), at 1,979,356 to 1,979,835 _1684 Shewana3_1685: Shewana3_1685 - extradiol ring-cleavage dioxygenase III subunit B (RefSeq), at 1,979,907 to 1,980,716 _1685 Position (kb) 1979 1980Strain fitness (log2 ratio) -2 -1 0 1at 1978.369 kb on - strand, within Shewana3_1683at 1978.605 kb on + strand, within Shewana3_1683at 1978.641 kb on + strand, within Shewana3_1683at 1979.045 kb on + strand, within Shewana3_1683at 1979.053 kb on - strand, within Shewana3_1683at 1979.152 kb on - strandat 1979.261 kb on - strandat 1979.264 kb on - strandat 1979.328 kb on - strandat 1979.335 kb on - strandat 1979.385 kb on + strandat 1979.428 kb on + strand, within Shewana3_1684at 1979.436 kb on - strand, within Shewana3_1684at 1980.050 kb on - strand, within Shewana3_1685at 1980.271 kb on + strand, within Shewana3_1685at 1980.468 kb on - strand, within Shewana3_1685at 1980.468 kb on - strand, within Shewana3_1685at 1980.622 kb on + strand, within Shewana3_1685

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,978,369 - Shewana3_1683 0.12 -0.4
1,978,605 + Shewana3_1683 0.39 -0.2
1,978,641 + Shewana3_1683 0.43 -0.0
1,979,045 + Shewana3_1683 0.88 +0.1
1,979,053 - Shewana3_1683 0.88 -0.4
1,979,152 - +0.3
1,979,261 - +0.2
1,979,264 - +0.3
1,979,328 - +0.6
1,979,335 - +0.2
1,979,385 + -0.6
1,979,428 + Shewana3_1684 0.15 -0.2
1,979,436 - Shewana3_1684 0.17 -1.8
1,980,050 - Shewana3_1685 0.18 -0.3
1,980,271 + Shewana3_1685 0.45 +0.0
1,980,468 - Shewana3_1685 0.69 -0.0
1,980,468 - Shewana3_1685 0.69 -0.0
1,980,622 + Shewana3_1685 0.88 -0.4

Or see this region's nucleotide sequence