Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1110

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1109 and rumA are separated by 101 nucleotidesrumA and Shewana3_1111 are separated by 189 nucleotides Shewana3_1109: Shewana3_1109 - hybrid sensory histidine kinase BarA (RefSeq), at 1,302,416 to 1,305,223 _1109 Shewana3_1110: rumA - 23S rRNA 5-methyluridine methyltransferase (RefSeq), at 1,305,325 to 1,306,674 rumA Shewana3_1111: Shewana3_1111 - (p)ppGpp synthetase I, SpoT/RelA (RefSeq), at 1,306,864 to 1,309,071 _1111 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1304.397 kb on - strand, within Shewana3_1109at 1304.515 kb on + strand, within Shewana3_1109at 1304.546 kb on - strand, within Shewana3_1109at 1304.615 kb on + strand, within Shewana3_1109at 1304.678 kb on + strand, within Shewana3_1109at 1304.681 kb on - strand, within Shewana3_1109at 1304.681 kb on - strand, within Shewana3_1109at 1304.683 kb on - strand, within Shewana3_1109at 1304.823 kb on - strand, within Shewana3_1109at 1304.829 kb on - strand, within Shewana3_1109at 1304.871 kb on + strand, within Shewana3_1109at 1305.071 kb on + strandat 1305.192 kb on - strandat 1305.194 kb on + strandat 1305.218 kb on + strandat 1305.218 kb on + strandat 1305.218 kb on + strandat 1305.425 kb on - strandat 1305.528 kb on + strand, within rumAat 1305.551 kb on - strand, within rumAat 1305.595 kb on - strand, within rumAat 1305.841 kb on - strand, within rumAat 1305.843 kb on + strand, within rumAat 1305.844 kb on + strand, within rumAat 1305.913 kb on - strand, within rumAat 1306.132 kb on + strand, within rumAat 1306.145 kb on + strand, within rumAat 1306.145 kb on + strand, within rumAat 1306.146 kb on - strand, within rumAat 1306.153 kb on - strand, within rumAat 1306.223 kb on + strand, within rumAat 1306.385 kb on + strand, within rumAat 1306.496 kb on + strand, within rumAat 1306.496 kb on + strand, within rumAat 1306.573 kb on - strandat 1306.785 kb on - strandat 1306.829 kb on + strandat 1306.970 kb on + strandat 1307.009 kb on - strandat 1307.062 kb on + strandat 1307.595 kb on - strand, within Shewana3_1111at 1307.604 kb on + strand, within Shewana3_1111at 1307.605 kb on + strand, within Shewana3_1111at 1307.605 kb on + strand, within Shewana3_1111at 1307.669 kb on - strand, within Shewana3_1111

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,304,397 - Shewana3_1109 0.71 +0.3
1,304,515 + Shewana3_1109 0.75 +1.1
1,304,546 - Shewana3_1109 0.76 +0.6
1,304,615 + Shewana3_1109 0.78 +0.3
1,304,678 + Shewana3_1109 0.81 +0.1
1,304,681 - Shewana3_1109 0.81 +0.6
1,304,681 - Shewana3_1109 0.81 +0.4
1,304,683 - Shewana3_1109 0.81 +0.1
1,304,823 - Shewana3_1109 0.86 +0.9
1,304,829 - Shewana3_1109 0.86 +0.1
1,304,871 + Shewana3_1109 0.87 +0.2
1,305,071 + +0.4
1,305,192 - -0.4
1,305,194 + +0.6
1,305,218 + +0.7
1,305,218 + +0.4
1,305,218 + +0.3
1,305,425 - -0.1
1,305,528 + rumA Shewana3_1110 0.15 -0.3
1,305,551 - rumA Shewana3_1110 0.17 +1.7
1,305,595 - rumA Shewana3_1110 0.20 -0.6
1,305,841 - rumA Shewana3_1110 0.38 +0.6
1,305,843 + rumA Shewana3_1110 0.38 -0.4
1,305,844 + rumA Shewana3_1110 0.38 -0.3
1,305,913 - rumA Shewana3_1110 0.44 -0.2
1,306,132 + rumA Shewana3_1110 0.60 -0.8
1,306,145 + rumA Shewana3_1110 0.61 +0.2
1,306,145 + rumA Shewana3_1110 0.61 -0.0
1,306,146 - rumA Shewana3_1110 0.61 -0.6
1,306,153 - rumA Shewana3_1110 0.61 -0.2
1,306,223 + rumA Shewana3_1110 0.67 -0.2
1,306,385 + rumA Shewana3_1110 0.79 -0.5
1,306,496 + rumA Shewana3_1110 0.87 +0.4
1,306,496 + rumA Shewana3_1110 0.87 -0.4
1,306,573 - +0.2
1,306,785 - -3.1
1,306,829 + -0.4
1,306,970 + -4.2
1,307,009 - +0.2
1,307,062 + -5.1
1,307,595 - Shewana3_1111 0.33 -5.5
1,307,604 + Shewana3_1111 0.34 -0.8
1,307,605 + Shewana3_1111 0.34 -4.1
1,307,605 + Shewana3_1111 0.34 -2.0
1,307,669 - Shewana3_1111 0.36 -2.4

Or see this region's nucleotide sequence