Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0234 and Shewana3_0235 are separated by 11 nucleotides Shewana3_0235 and Shewana3_0236 overlap by 4 nucleotides Shewana3_0236 and Shewana3_0237 overlap by 4 nucleotides
Shewana3_0234: Shewana3_0234 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 263,235 to 265,214
_0234
Shewana3_0235: Shewana3_0235 - periplasmic protein thiol--disulphide oxidoreductase DsbE (RefSeq), at 265,226 to 265,780
_0235
Shewana3_0236: Shewana3_0236 - cytochrome C biogenesis protein (RefSeq), at 265,777 to 266,256
_0236
Shewana3_0237: Shewana3_0237 - redoxin domain-containing protein (RefSeq), at 266,253 to 266,834
_0237
Position (kb) 265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 264.247 kb on + strand, within Shewana3_0234 at 264.774 kb on + strand, within Shewana3_0234 at 264.829 kb on + strand, within Shewana3_0234 at 264.829 kb on + strand, within Shewana3_0234 at 264.874 kb on - strand, within Shewana3_0234 at 264.874 kb on - strand, within Shewana3_0234 at 265.112 kb on + strand at 265.395 kb on - strand, within Shewana3_0235 at 265.532 kb on - strand, within Shewana3_0235 at 265.562 kb on + strand, within Shewana3_0235 at 265.613 kb on + strand, within Shewana3_0235 at 265.765 kb on + strand at 265.842 kb on + strand, within Shewana3_0236 at 265.851 kb on + strand, within Shewana3_0236 at 265.915 kb on - strand, within Shewana3_0236 at 265.952 kb on + strand, within Shewana3_0236 at 266.018 kb on - strand, within Shewana3_0236 at 266.113 kb on + strand, within Shewana3_0236 at 266.113 kb on + strand, within Shewana3_0236 at 266.249 kb on - strand at 266.279 kb on - strand at 266.526 kb on + strand, within Shewana3_0237 at 266.546 kb on + strand, within Shewana3_0237 at 266.568 kb on + strand, within Shewana3_0237 at 266.624 kb on - strand, within Shewana3_0237 at 266.671 kb on + strand, within Shewana3_0237 at 266.674 kb on - strand, within Shewana3_0237 at 266.738 kb on - strand, within Shewana3_0237
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 264,247 + Shewana3_0234 0.51 +0.0 264,774 + Shewana3_0234 0.78 -1.4 264,829 + Shewana3_0234 0.81 -1.3 264,829 + Shewana3_0234 0.81 -2.0 264,874 - Shewana3_0234 0.83 -2.2 264,874 - Shewana3_0234 0.83 -1.5 265,112 + -1.0 265,395 - Shewana3_0235 0.30 -1.5 265,532 - Shewana3_0235 0.55 -1.0 265,562 + Shewana3_0235 0.61 -1.9 265,613 + Shewana3_0235 0.70 -3.5 265,765 + +0.0 265,842 + Shewana3_0236 0.14 -0.7 265,851 + Shewana3_0236 0.15 -2.8 265,915 - Shewana3_0236 0.29 -0.3 265,952 + Shewana3_0236 0.36 +0.3 266,018 - Shewana3_0236 0.50 -1.2 266,113 + Shewana3_0236 0.70 -2.1 266,113 + Shewana3_0236 0.70 -0.7 266,249 - -0.2 266,279 - -0.5 266,526 + Shewana3_0237 0.47 -0.0 266,546 + Shewana3_0237 0.50 -0.5 266,568 + Shewana3_0237 0.54 +0.1 266,624 - Shewana3_0237 0.64 -0.2 266,671 + Shewana3_0237 0.72 +0.3 266,674 - Shewana3_0237 0.72 +0.7 266,738 - Shewana3_0237 0.83 -0.1
Or see this region's nucleotide sequence