Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4339 and Shewana3_4340 are separated by 73 nucleotides Shewana3_4340 and Shewana3_4341 are separated by 407 nucleotides Shewana3_4341 and Shewana3_4342 are separated by 71 nucleotides Shewana3_4342 and Shewana3_4343 are separated by 15 nucleotides Shewana3_4343 and Shewana3_4344 are separated by 27 nucleotides
Shewana3_4339: Shewana3_4339 - integrase catalytic subunit (RefSeq), at 226,703 to 227,731
_4339
Shewana3_4340: Shewana3_4340 - hypothetical protein (RefSeq), at 227,805 to 228,281
_4340
Shewana3_4341: Shewana3_4341 - putative transcriptional regulator MerR (RefSeq), at 228,689 to 229,144
_4341
Shewana3_4342: Shewana3_4342 - putative mercuric transport protein (RefSeq), at 229,216 to 229,611
_4342
Shewana3_4343: Shewana3_4343 - mercuric transport protein periplasmic component (RefSeq), at 229,627 to 229,902
_4343
Shewana3_4344: Shewana3_4344 - putative mercury transport protein MerC (RefSeq), at 229,930 to 230,355
_4344
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 227.742 kb on - strand at 227.884 kb on - strand, within Shewana3_4340 at 227.945 kb on - strand, within Shewana3_4340 at 227.994 kb on + strand, within Shewana3_4340 at 228.215 kb on + strand, within Shewana3_4340 at 228.558 kb on + strand at 228.582 kb on + strand at 228.652 kb on + strand at 228.687 kb on + strand at 228.711 kb on - strand at 228.861 kb on + strand, within Shewana3_4341 at 228.946 kb on + strand, within Shewana3_4341 at 228.987 kb on + strand, within Shewana3_4341 at 229.077 kb on - strand, within Shewana3_4341 at 229.240 kb on - strand at 229.427 kb on + strand, within Shewana3_4342 at 229.432 kb on + strand, within Shewana3_4342 at 229.446 kb on + strand, within Shewana3_4342 at 229.674 kb on + strand, within Shewana3_4343 at 229.735 kb on - strand, within Shewana3_4343 at 229.784 kb on - strand, within Shewana3_4343 at 229.992 kb on + strand, within Shewana3_4344
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 227,742 - -3.3 227,884 - Shewana3_4340 0.17 +0.2 227,945 - Shewana3_4340 0.29 +0.9 227,994 + Shewana3_4340 0.40 +1.2 228,215 + Shewana3_4340 0.86 -0.1 228,558 + +0.7 228,582 + +0.5 228,652 + -0.1 228,687 + -0.3 228,711 - -0.5 228,861 + Shewana3_4341 0.38 -1.0 228,946 + Shewana3_4341 0.56 -0.9 228,987 + Shewana3_4341 0.65 -1.0 229,077 - Shewana3_4341 0.85 +1.1 229,240 - -0.2 229,427 + Shewana3_4342 0.53 +0.6 229,432 + Shewana3_4342 0.55 +0.2 229,446 + Shewana3_4342 0.58 +0.1 229,674 + Shewana3_4343 0.17 +1.0 229,735 - Shewana3_4343 0.39 -0.0 229,784 - Shewana3_4343 0.57 -1.1 229,992 + Shewana3_4344 0.15 +0.2
Or see this region's nucleotide sequence