Strain Fitness in Shewanella amazonensis SB2B around Sama_1071

Experiment: D,L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate
1,295,790	+				-0.2
1,295,804	-				-1.2
1,295,810	+				+0.4
1,295,810	+				-1.0
1,295,810	+				+0.2
1,295,810	+				-0.5
1,295,811	-				-2.7
1,295,831	+				+0.6
1,295,831	+				-0.1
1,295,831	+				-1.4
1,295,937	-				-1.8
1,296,004	+		Sama_1070	0.12	-0.8
1,296,005	-		Sama_1070	0.12	-0.7
1,296,022	+		Sama_1070	0.14	+0.2
1,296,022	+		Sama_1070	0.14	+0.2
1,296,105	-		Sama_1070	0.24	+0.5
1,296,105	-		Sama_1070	0.24	-1.8
1,296,117	+		Sama_1070	0.25	+0.5
1,296,118	-		Sama_1070	0.25	-0.5
1,296,118	-		Sama_1070	0.25	-0.1
1,296,168	+		Sama_1070	0.31	-0.2
1,296,208	+		Sama_1070	0.36	-0.4
1,296,208	+		Sama_1070	0.36	+1.5
1,296,208	+		Sama_1070	0.36	-0.4
1,296,208	+		Sama_1070	0.36	+0.9
1,296,209	-		Sama_1070	0.36	-0.0
1,296,209	-		Sama_1070	0.36	+0.2
1,296,209	-		Sama_1070	0.36	+0.1
1,296,209	-		Sama_1070	0.36	+0.6
1,296,209	-		Sama_1070	0.36	+3.8
1,296,260	+		Sama_1070	0.42	+0.7
1,296,260	+		Sama_1070	0.42	+0.5
1,296,260	+		Sama_1070	0.42	-0.9
1,296,260	+		Sama_1070	0.42	+0.4
1,296,260	+		Sama_1070	0.42	-0.2
1,296,260	+		Sama_1070	0.42	-0.7
1,296,261	-		Sama_1070	0.42	+0.2
1,296,261	-		Sama_1070	0.42	+0.9
1,296,264	+		Sama_1070	0.42	-0.6
1,296,265	-		Sama_1070	0.43	-0.1
1,296,265	-		Sama_1070	0.43	-1.5
1,296,318	+		Sama_1070	0.49	+0.2
1,296,318	+		Sama_1070	0.49	-0.4
1,296,318	+		Sama_1070	0.49	+0.7
1,296,319	-		Sama_1070	0.49	-1.0
1,296,319	-		Sama_1070	0.49	-0.2
1,296,346	+		Sama_1070	0.52	-0.6
1,296,347	-		Sama_1070	0.52	-0.1
1,296,359	-		Sama_1070	0.54	-0.4
1,296,428	+		Sama_1070	0.62	-0.4
1,296,428	+		Sama_1070	0.62	-0.1
1,296,428	+		Sama_1070	0.62	-0.2
1,296,429	-		Sama_1070	0.62	+0.8
1,296,429	-		Sama_1070	0.62	-0.4
1,296,489	+		Sama_1070	0.69	-0.7
1,296,554	+		Sama_1070	0.77	+0.6
1,296,554	+		Sama_1070	0.77	+0.2
1,296,554	+		Sama_1070	0.77	+0.2
1,296,554	+		Sama_1070	0.77	+1.2
1,296,554	+		Sama_1070	0.77	+0.8
1,296,554	+		Sama_1070	0.77	+1.2
1,296,554	+		Sama_1070	0.77	+1.9
1,296,554	+		Sama_1070	0.77	+0.2
1,296,555	-		Sama_1070	0.77	-0.9
1,296,555	-		Sama_1070	0.77	+1.4
1,296,606	+		Sama_1070	0.83	-0.7
1,296,606	+		Sama_1070	0.83	-2.3
1,296,606	+		Sama_1070	0.83	-0.3
1,296,606	+		Sama_1070	0.83	-0.4
1,296,607	-		Sama_1070	0.83	+0.2
1,296,607	-		Sama_1070	0.83	-1.3
1,296,607	-		Sama_1070	0.83	+1.2
1,296,607	-		Sama_1070	0.83	+0.9
1,296,607	-		Sama_1070	0.83	-0.4
1,296,607	-		Sama_1070	0.83	+0.7
1,296,657	-		Sama_1070	0.89	-2.0
1,296,657	-		Sama_1070	0.89	+1.0
1,296,674	+				+0.6
1,296,674	+				+0.6
1,296,674	+				-0.8
1,296,674	+				-0.7
1,296,675	-				-0.8
1,296,680	+				-0.5
1,296,698	+				-0.1
1,296,762	+				-0.9
1,296,762	+				+1.8
1,296,762	+				-0.7
1,296,762	+				+1.7
1,296,762	+				-0.2
1,296,762	+				-0.1
1,296,763	-				-0.3
1,296,763	-				-0.1
1,296,763	-				+0.4
1,296,763	-				-0.3
1,296,763	-				+0.5
1,296,763	-				+0.2
1,296,763	-				+0.5
1,296,763	-				+0.8
1,296,781	+				+0.2
1,296,781	+				-1.0
1,296,782	-				-2.0
1,296,782	-				+0.5
1,296,782	-				+0.3
1,296,814	-				+0.8
1,296,814	-				-0.1
1,296,814	-				+0.4
1,296,838	-				-1.3
1,296,855	+				+1.0
1,296,856	-				-1.4
1,296,856	-				-1.6
1,296,856	-				-2.5
1,296,856	-				+0.2
1,296,878	+				+0.4
1,296,878	+				-0.4
1,296,878	+				+1.0
1,296,878	+				-1.2
1,296,878	+				+0.5
1,296,878	+				+1.2
1,296,878	+				-0.4
1,296,878	+				+0.3
1,296,878	+				-1.1
1,296,879	-				-0.2
1,296,931	+		Sama_1071	0.13	-1.5
1,296,932	-		Sama_1071	0.14	-0.1
1,296,932	-		Sama_1071	0.14	+0.8
1,297,019	+		Sama_1071	0.21	+0.5
1,297,020	-		Sama_1071	0.21	-0.8
1,297,051	+		Sama_1071	0.24	+0.3
1,297,051	+		Sama_1071	0.24	+0.0
1,297,052	-		Sama_1071	0.24	+1.9
1,297,052	-		Sama_1071	0.24	-2.4
1,297,113	+		Sama_1071	0.29	+0.2
1,297,113	+		Sama_1071	0.29	-0.9
1,297,113	+		Sama_1071	0.29	-0.9
1,297,113	+		Sama_1071	0.29	-1.4
1,297,115	+		Sama_1071	0.29	+0.2
1,297,116	-		Sama_1071	0.29	-1.3
1,297,175	-		Sama_1071	0.34	+0.3
1,297,180	+		Sama_1071	0.34	+0.1
1,297,180	+		Sama_1071	0.34	+0.7
1,297,180	+		Sama_1071	0.34	+1.2
1,297,181	-		Sama_1071	0.35	+1.6
1,297,181	-		Sama_1071	0.35	+0.4
1,297,181	-		Sama_1071	0.35	-0.2
1,297,181	-		Sama_1071	0.35	+0.2
1,297,181	-		Sama_1071	0.35	+1.3
1,297,181	-		Sama_1071	0.35	+0.3
1,297,181	-		Sama_1071	0.35	+0.2
1,297,181	-		Sama_1071	0.35	+0.8
1,297,181	-		Sama_1071	0.35	+1.7
1,297,181	-		Sama_1071	0.35	-2.1
1,297,189	+		Sama_1071	0.35	-0.5
1,297,189	+		Sama_1071	0.35	-0.8
1,297,189	+		Sama_1071	0.35	-0.2
1,297,189	+		Sama_1071	0.35	-1.8
1,297,189	+		Sama_1071	0.35	-1.3
1,297,189	+		Sama_1071	0.35	+0.9
1,297,189	+		Sama_1071	0.35	-0.9
1,297,189	+		Sama_1071	0.35	-0.1
1,297,189	+		Sama_1071	0.35	-2.0
1,297,189	+		Sama_1071	0.35	-1.5
1,297,190	-		Sama_1071	0.35	+0.4
1,297,190	-		Sama_1071	0.35	-0.1
1,297,190	-		Sama_1071	0.35	-0.1
1,297,190	-		Sama_1071	0.35	-0.4
1,297,190	-		Sama_1071	0.35	-0.7
1,297,190	-		Sama_1071	0.35	-1.0
1,297,190	-		Sama_1071	0.35	-0.5
1,297,190	-		Sama_1071	0.35	-0.5
1,297,190	-		Sama_1071	0.35	+0.1
1,297,190	-		Sama_1071	0.35	-0.6
1,297,190	-		Sama_1071	0.35	-0.3
1,297,190	-		Sama_1071	0.35	-1.4
1,297,190	-		Sama_1071	0.35	-0.6
1,297,190	-		Sama_1071	0.35	+0.4
1,297,190	-		Sama_1071	0.35	-0.1
1,297,285	+		Sama_1071	0.43	-0.2
1,297,285	+		Sama_1071	0.43	-0.3
1,297,285	+		Sama_1071	0.43	-0.5
1,297,366	+		Sama_1071	0.50	+0.3
1,297,445	-		Sama_1071	0.57	-0.2
1,297,445	-		Sama_1071	0.57	-0.0
1,297,459	-		Sama_1071	0.58	-0.2
1,297,459	-		Sama_1071	0.58	-1.6
1,297,474	+		Sama_1071	0.59	-1.1
1,297,474	+		Sama_1071	0.59	-1.1
1,297,478	-		Sama_1071	0.60	-1.4
1,297,502	+		Sama_1071	0.62	-0.8
1,297,540	-		Sama_1071	0.65	-0.4
1,297,566	+		Sama_1071	0.67	-0.4
1,297,639	-		Sama_1071	0.73	+0.2
1,297,639	-		Sama_1071	0.73	-2.0
1,297,672	+		Sama_1071	0.76	+1.9
1,297,672	+		Sama_1071	0.76	-1.1
1,297,672	+		Sama_1071	0.76	-0.3
1,297,673	-		Sama_1071	0.76	+1.0
1,297,673	-		Sama_1071	0.76	+0.0
1,297,673	-		Sama_1071	0.76	-0.2
1,297,673	-		Sama_1071	0.76	-0.2
1,297,673	-		Sama_1071	0.76	-0.8
1,297,673	-		Sama_1071	0.76	-3.1
1,297,684	-		Sama_1071	0.77	-0.5
1,297,684	-		Sama_1071	0.77	+0.7
1,297,697	-		Sama_1071	0.78	-0.8
1,297,703	+		Sama_1071	0.79	-1.1
1,297,704	-		Sama_1071	0.79	-1.4
1,297,704	-		Sama_1071	0.79	+1.2
1,297,704	-		Sama_1071	0.79	-0.0
1,297,704	-		Sama_1071	0.79	-0.1
1,297,728	-		Sama_1071	0.81	+0.5
1,297,728	-		Sama_1071	0.81	-0.3
1,297,738	-		Sama_1071	0.82	-0.7
1,297,738	-		Sama_1071	0.82	-0.5
1,297,781	+		Sama_1071	0.85	-0.2
1,297,781	+		Sama_1071	0.85	+0.2
1,297,781	+		Sama_1071	0.85	+0.8
1,297,791	+		Sama_1071	0.86	+0.5
1,297,791	+		Sama_1071	0.86	-0.1
1,297,792	-		Sama_1071	0.86	-0.4
1,297,792	-		Sama_1071	0.86	-0.5
1,297,795	+		Sama_1071	0.86	+0.7
1,297,795	+		Sama_1071	0.86	-0.8
1,297,795	+		Sama_1071	0.86	+0.5
1,297,795	+		Sama_1071	0.86	+1.9
1,297,795	+		Sama_1071	0.86	-1.3
1,297,796	-		Sama_1071	0.86	-0.7
1,297,796	-		Sama_1071	0.86	+0.1
1,297,796	-		Sama_1071	0.86	-2.3
1,297,796	-		Sama_1071	0.86	-1.1
1,297,826	-		Sama_1071	0.89	+0.6
1,297,835	+		Sama_1071	0.90	-1.3
1,297,836	-		Sama_1071	0.90	+0.3
1,297,836	-		Sama_1071	0.90	-0.6
1,297,836	-		Sama_1071	0.90	-1.2
1,297,836	-		Sama_1071	0.90	+0.4
1,297,836	-		Sama_1071	0.90	+0.4
1,297,848	+				-0.3
1,297,851	-				+1.0
1,297,851	-				-0.3
1,297,851	-				-0.7
1,297,864	+				+0.7
1,297,864	+				+0.1
1,297,864	+				-1.9
1,297,864	+				-1.6
1,297,864	+				-0.2
1,297,864	+				-2.1
1,297,864	+				-0.6
1,297,864	+				-0.0
1,297,864	+				-0.0
1,297,864	+				+2.2
1,297,864	+				+1.2
1,297,864	+				-0.1
1,297,864	+				-1.6
1,297,864	+				-1.3
1,297,865	-				+0.2
1,297,865	-				-0.7
1,297,865	-				+1.0
1,297,865	-				+0.3
1,297,865	-				+0.4
1,297,865	-				-1.9
1,297,865	-				-1.0
1,297,865	-				-0.2
1,297,865	-				+1.2
1,297,865	-				-1.1
1,297,865	-				-0.8
1,297,865	-				+0.4
1,297,865	-				-0.7
1,297,865	-				+0.2
1,297,865	-				-1.4
1,297,899	+				-0.1
1,297,899	+				-0.1
1,297,899	+				-0.6
1,297,900	-				+0.0
1,297,900	-				+0.2
1,297,900	-				+0.2
1,297,931	+				+0.1
1,297,969	+				-1.4
1,297,969	+				-0.4
1,297,969	+				+0.4
1,297,970	-				+0.2
1,297,970	-				+0.2
1,297,984	-				-0.7
1,297,989	+				-0.4
1,297,989	+				-2.4
1,297,989	+				-0.4
1,297,989	+				-0.6
1,297,989	+				-1.4
1,297,990	-				+1.2
1,297,990	-				+0.6
1,297,990	-				+0.6
1,297,990	-				-0.4
1,297,990	-				-0.2
1,297,990	-				-1.0
1,297,992	-				-2.3
1,298,005	+				-1.4
1,298,005	+				-0.4
1,298,008	+				-0.3
1,298,048	+				-0.3
1,298,048	+				+0.1
1,298,048	+				+1.4
1,298,049	-				-0.1
1,298,075	+				-0.1
1,298,085	-				+0.2
1,298,092	-				+0.9
1,298,107	+				+1.9
1,298,107	+				-0.1
1,298,107	+				-1.1
1,298,115	+				+1.2
1,298,143	+				+0.2
1,298,149	+				-1.4
1,298,149	+				-0.9
1,298,150	-				+0.7
1,298,167	+				+0.2
1,298,183	-				+2.2
1,298,252	+				-2.3
1,298,252	+				+0.2
1,298,252	+				+0.9
1,298,252	+				+0.6
1,298,252	+				-0.4
1,298,253	-				-2.0
1,298,253	-				-0.7
1,298,253	-				+0.4
1,298,277	+				+0.4
1,298,277	+				+0.2
1,298,277	+				+1.3
1,298,278	-				-0.8
1,298,278	-				+1.5
1,298,278	-				-2.0
1,298,294	+				+0.5
1,298,295	-				+1.2
1,298,295	-				-1.0
1,298,304	+				+0.3
1,298,315	-				-0.0
1,298,404	+				+0.8
1,298,405	-				-0.6
1,298,467	-				+0.2
1,298,707	-	rdgC	Sama_1072	0.25	-0.9
1,298,707	-	rdgC	Sama_1072	0.25	+0.3
1,298,777	+	rdgC	Sama_1072	0.33	-0.4
1,298,777	+	rdgC	Sama_1072	0.33	+1.2
1,298,801	+	rdgC	Sama_1072	0.35	-0.6
1,298,801	+	rdgC	Sama_1072	0.35	-0.8
1,298,802	-	rdgC	Sama_1072	0.36	-1.1
1,298,826	-	rdgC	Sama_1072	0.38	-0.0
1,298,867	+	rdgC	Sama_1072	0.43	+0.5
1,298,867	+	rdgC	Sama_1072	0.43	+1.2
1,298,868	-	rdgC	Sama_1072	0.43	+0.0
1,298,868	-	rdgC	Sama_1072	0.43	+0.9
1,298,868	-	rdgC	Sama_1072	0.43	-0.4
1,298,868	-	rdgC	Sama_1072	0.43	+2.2
1,298,868	-	rdgC	Sama_1072	0.43	+1.2
1,298,901	+	rdgC	Sama_1072	0.46	-1.4
1,298,902	-	rdgC	Sama_1072	0.46	-0.5
1,298,902	-	rdgC	Sama_1072	0.46	+0.0
1,298,902	-	rdgC	Sama_1072	0.46	-2.5
1,298,928	-	rdgC	Sama_1072	0.49	-0.4
1,298,928	-	rdgC	Sama_1072	0.49	-0.5
1,298,928	-	rdgC	Sama_1072	0.49	-0.1