Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_912 and HP15_913 overlap by 22 nucleotides HP15_913 and HP15_914 overlap by 1 nucleotides HP15_914 and HP15_915 are separated by 12 nucleotides
HP15_912: HP15_912 - type VI secretion system Vgr family protein, at 923,614 to 925,734
_912
HP15_913: HP15_913 - conserved hypothetical protein, at 925,713 to 926,525
_913
HP15_914: HP15_914 - peptidoglycan-binding LysM, at 926,525 to 928,642
_914
HP15_915: HP15_915 - secreted protein containing sulphatase-modifying factor domain, at 928,655 to 929,614
_915
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2 at 925.728 kb on - strand at 925.885 kb on + strand, within HP15_913 at 925.885 kb on + strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.896 kb on + strand, within HP15_913 at 925.912 kb on - strand, within HP15_913 at 925.919 kb on + strand, within HP15_913 at 925.961 kb on - strand, within HP15_913 at 925.979 kb on - strand, within HP15_913 at 926.017 kb on + strand, within HP15_913 at 926.089 kb on - strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.410 kb on - strand, within HP15_913 at 926.423 kb on + strand, within HP15_913 at 926.466 kb on - strand at 926.483 kb on + strand at 926.491 kb on - strand at 926.573 kb on + strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.644 kb on - strand at 926.733 kb on + strand at 926.874 kb on + strand, within HP15_914 at 926.882 kb on - strand, within HP15_914 at 926.895 kb on + strand, within HP15_914 at 926.895 kb on + strand, within HP15_914 at 926.903 kb on - strand, within HP15_914 at 926.990 kb on + strand, within HP15_914 at 926.998 kb on - strand, within HP15_914 at 927.159 kb on + strand, within HP15_914 at 927.167 kb on - strand, within HP15_914 at 927.289 kb on - strand, within HP15_914 at 927.304 kb on - strand, within HP15_914 at 927.326 kb on - strand, within HP15_914 at 927.350 kb on - strand, within HP15_914 at 927.405 kb on + strand, within HP15_914 at 927.470 kb on - strand, within HP15_914 at 927.470 kb on - strand, within HP15_914 at 927.478 kb on + strand, within HP15_914 at 927.486 kb on - strand, within HP15_914 at 927.546 kb on - strand, within HP15_914 at 927.648 kb on + strand, within HP15_914 at 927.690 kb on + strand, within HP15_914 at 927.691 kb on - strand, within HP15_914 at 927.703 kb on + strand, within HP15_914 at 927.718 kb on + strand, within HP15_914 at 927.737 kb on - strand, within HP15_914 at 927.824 kb on - strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.956 kb on - strand, within HP15_914 at 928.059 kb on + strand, within HP15_914 at 928.188 kb on - strand, within HP15_914 at 928.306 kb on + strand, within HP15_914 at 928.666 kb on + strand at 928.839 kb on - strand, within HP15_915 at 929.142 kb on - strand, within HP15_915 at 929.184 kb on - strand, within HP15_915 at 929.235 kb on + strand, within HP15_915 at 929.348 kb on - strand, within HP15_915 at 929.446 kb on - strand, within HP15_915
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 925,728 - -0.2 925,885 + HP15_913 0.21 -0.6 925,885 + HP15_913 0.21 -0.9 925,893 - HP15_913 0.22 -0.1 925,893 - HP15_913 0.22 +2.2 925,896 + HP15_913 0.23 -0.7 925,912 - HP15_913 0.24 -0.7 925,919 + HP15_913 0.25 -1.5 925,961 - HP15_913 0.31 -1.0 925,979 - HP15_913 0.33 +2.1 926,017 + HP15_913 0.37 +2.1 926,089 - HP15_913 0.46 -0.1 926,130 + HP15_913 0.51 +0.8 926,130 + HP15_913 0.51 +2.0 926,392 + HP15_913 0.84 -0.2 926,392 + HP15_913 0.84 -0.2 926,410 - HP15_913 0.86 -0.5 926,423 + HP15_913 0.87 -1.3 926,466 - -1.3 926,483 + +0.4 926,491 - -0.4 926,573 + +1.9 926,599 - -0.5 926,599 - -0.2 926,599 - -0.6 926,644 - +0.3 926,733 + +1.7 926,874 + HP15_914 0.16 +1.7 926,882 - HP15_914 0.17 -0.3 926,895 + HP15_914 0.17 -0.8 926,895 + HP15_914 0.17 -0.6 926,903 - HP15_914 0.18 -0.8 926,990 + HP15_914 0.22 -1.3 926,998 - HP15_914 0.22 -0.6 927,159 + HP15_914 0.30 +2.7 927,167 - HP15_914 0.30 +1.3 927,289 - HP15_914 0.36 +1.4 927,304 - HP15_914 0.37 +1.4 927,326 - HP15_914 0.38 +2.3 927,350 - HP15_914 0.39 -1.4 927,405 + HP15_914 0.42 -0.2 927,470 - HP15_914 0.45 -0.3 927,470 - HP15_914 0.45 -1.1 927,478 + HP15_914 0.45 -0.4 927,486 - HP15_914 0.45 -1.0 927,546 - HP15_914 0.48 -0.6 927,648 + HP15_914 0.53 +0.5 927,690 + HP15_914 0.55 +1.5 927,691 - HP15_914 0.55 -0.5 927,703 + HP15_914 0.56 +0.2 927,718 + HP15_914 0.56 +0.1 927,737 - HP15_914 0.57 +2.3 927,824 - HP15_914 0.61 -1.3 927,931 + HP15_914 0.66 -1.0 927,931 + HP15_914 0.66 +0.1 927,956 - HP15_914 0.68 -1.8 928,059 + HP15_914 0.72 -0.4 928,188 - HP15_914 0.79 -0.6 928,306 + HP15_914 0.84 -0.1 928,666 + +1.6 928,839 - HP15_915 0.19 -1.7 929,142 - HP15_915 0.51 +2.2 929,184 - HP15_915 0.55 +2.1 929,235 + HP15_915 0.60 +2.3 929,348 - HP15_915 0.72 +2.1 929,446 - HP15_915 0.82 +0.1
Or see this region's nucleotide sequence