Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_895 and HP15_896 overlap by 1 nucleotides HP15_896 and HP15_897 are separated by 10 nucleotides HP15_897 and HP15_898 are separated by 21 nucleotides
HP15_895: HP15_895 - serine/threonine protein kinase, at 909,179 to 910,831
_895
HP15_896: HP15_896 - serine/threonine protein phosphatase, at 910,831 to 911,586
_896
HP15_897: HP15_897 - protein containing forkhead-associated domain, at 911,597 to 911,947
_897
HP15_898: HP15_898 - glutamine amidotransferase class-I, at 911,969 to 912,679
_898
Position (kb) 910
911
912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 909.854 kb on - strand, within HP15_895 at 909.964 kb on + strand, within HP15_895 at 910.006 kb on + strand, within HP15_895 at 910.252 kb on - strand, within HP15_895 at 910.351 kb on + strand, within HP15_895 at 910.359 kb on - strand, within HP15_895 at 910.359 kb on - strand, within HP15_895 at 910.498 kb on + strand, within HP15_895 at 910.528 kb on + strand, within HP15_895 at 910.536 kb on - strand, within HP15_895 at 910.620 kb on + strand, within HP15_895 at 910.628 kb on - strand, within HP15_895 at 910.628 kb on - strand, within HP15_895 at 910.633 kb on - strand, within HP15_895 at 910.642 kb on - strand, within HP15_895 at 910.733 kb on - strand at 910.774 kb on + strand at 910.782 kb on - strand at 911.264 kb on + strand, within HP15_896 at 911.267 kb on - strand, within HP15_896 at 911.270 kb on - strand, within HP15_896 at 911.272 kb on + strand, within HP15_896 at 911.280 kb on - strand, within HP15_896 at 911.290 kb on - strand, within HP15_896 at 911.338 kb on + strand, within HP15_896 at 911.338 kb on + strand, within HP15_896 at 911.343 kb on + strand, within HP15_896 at 911.343 kb on + strand at 911.343 kb on + strand, within HP15_896 at 911.351 kb on - strand, within HP15_896 at 911.351 kb on - strand, within HP15_896 at 911.363 kb on - strand, within HP15_896 at 911.540 kb on - strand at 911.640 kb on + strand, within HP15_897 at 911.734 kb on + strand, within HP15_897 at 912.143 kb on - strand, within HP15_898 at 912.184 kb on - strand, within HP15_898 at 912.317 kb on + strand, within HP15_898 at 912.367 kb on - strand, within HP15_898 at 912.369 kb on + strand, within HP15_898 at 912.496 kb on + strand, within HP15_898
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 909,854 - HP15_895 0.41 +0.0 909,964 + HP15_895 0.47 +0.0 910,006 + HP15_895 0.50 -0.7 910,252 - HP15_895 0.65 -0.7 910,351 + HP15_895 0.71 -2.5 910,359 - HP15_895 0.71 -0.4 910,359 - HP15_895 0.71 +1.4 910,498 + HP15_895 0.80 -1.2 910,528 + HP15_895 0.82 -0.6 910,536 - HP15_895 0.82 +1.4 910,620 + HP15_895 0.87 -1.0 910,628 - HP15_895 0.88 -0.8 910,628 - HP15_895 0.88 -0.6 910,633 - HP15_895 0.88 -1.2 910,642 - HP15_895 0.89 -0.4 910,733 - +1.8 910,774 + +1.9 910,782 - -0.3 911,264 + HP15_896 0.57 +0.7 911,267 - HP15_896 0.58 -0.1 911,270 - HP15_896 0.58 +2.1 911,272 + HP15_896 0.58 +0.9 911,280 - HP15_896 0.59 +0.5 911,290 - HP15_896 0.61 -1.2 911,338 + HP15_896 0.67 -1.0 911,338 + HP15_896 0.67 -0.9 911,343 + HP15_896 0.68 -2.3 911,343 + +0.7 911,343 + HP15_896 0.68 -0.1 911,351 - HP15_896 0.69 -0.5 911,351 - HP15_896 0.69 -0.5 911,363 - HP15_896 0.70 -2.8 911,540 - -0.4 911,640 + HP15_897 0.12 -0.9 911,734 + HP15_897 0.39 -0.0 912,143 - HP15_898 0.24 -0.3 912,184 - HP15_898 0.30 +1.0 912,317 + HP15_898 0.49 +0.2 912,367 - HP15_898 0.56 +1.8 912,369 + HP15_898 0.56 -1.8 912,496 + HP15_898 0.74 +0.5
Or see this region's nucleotide sequence