Strain Fitness in Marinobacter adhaerens HP15 around HP15_879

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_877 and HP15_878 are separated by 106 nucleotidesHP15_878 and HP15_879 are separated by 84 nucleotidesHP15_879 and HP15_880 are separated by 57 nucleotidesHP15_880 and HP15_881 are separated by 4 nucleotides HP15_877: HP15_877 - lipase/esterase, at 894,421 to 895,491 _877 HP15_878: HP15_878 - conserved hypothetical protein, at 895,598 to 895,924 _878 HP15_879: HP15_879 - short-chain dehydrogenase/reductase SDR, at 896,009 to 896,683 _879 HP15_880: HP15_880 - oxidoreductase, short chain dehydrogenase/reductase family, at 896,741 to 897,472 _880 HP15_881: HP15_881 - 2',5' RNA ligase, at 897,477 to 898,019 _881 Position (kb) 896 897Strain fitness (log2 ratio) -2 -1 0 1 2at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.114 kb on - strand, within HP15_877at 895.213 kb on + strand, within HP15_877at 895.215 kb on - strand, within HP15_877at 895.236 kb on - strand, within HP15_877at 895.236 kb on - strand, within HP15_877at 895.241 kb on - strand, within HP15_877at 895.374 kb on + strand, within HP15_877at 895.427 kb on + strandat 895.438 kb on + strandat 895.451 kb on - strandat 895.484 kb on - strandat 895.529 kb on + strandat 895.537 kb on - strandat 895.633 kb on - strand, within HP15_878at 895.665 kb on - strand, within HP15_878at 895.665 kb on - strand, within HP15_878at 895.673 kb on + strand, within HP15_878at 895.691 kb on + strand, within HP15_878at 895.741 kb on - strand, within HP15_878at 895.743 kb on - strand, within HP15_878at 895.763 kb on + strand, within HP15_878at 895.851 kb on + strand, within HP15_878at 895.859 kb on - strand, within HP15_878at 895.939 kb on - strandat 895.939 kb on - strandat 896.167 kb on - strand, within HP15_879at 896.294 kb on - strand, within HP15_879at 896.334 kb on + strand, within HP15_879at 896.342 kb on - strand, within HP15_879at 896.385 kb on - strand, within HP15_879at 896.433 kb on + strand, within HP15_879at 896.443 kb on - strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.547 kb on + strand, within HP15_879at 896.676 kb on - strandat 896.917 kb on + strand, within HP15_880at 897.091 kb on - strand, within HP15_880at 897.129 kb on + strand, within HP15_880at 897.189 kb on - strand, within HP15_880at 897.278 kb on + strand, within HP15_880at 897.281 kb on - strand, within HP15_880at 897.288 kb on + strand, within HP15_880at 897.296 kb on - strand, within HP15_880at 897.326 kb on + strand, within HP15_880at 897.345 kb on + strand, within HP15_880at 897.345 kb on + strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.448 kb on - strandat 897.566 kb on + strand, within HP15_881at 897.579 kb on - strand, within HP15_881at 897.579 kb on - strand, within HP15_881at 897.587 kb on + strand, within HP15_881at 897.646 kb on - strand, within HP15_881

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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895,017 + HP15_877 0.56 +0.8
895,017 + HP15_877 0.56 -1.1
895,017 + HP15_877 0.56 +0.2
895,017 + HP15_877 0.56 -0.7
895,017 + HP15_877 0.56 +2.0
895,025 - HP15_877 0.56 -2.1
895,025 - HP15_877 0.56 +2.2
895,025 - HP15_877 0.56 +0.0
895,025 - HP15_877 0.56 -0.3
895,114 - HP15_877 0.65 +0.3
895,213 + HP15_877 0.74 -0.7
895,215 - HP15_877 0.74 -1.2
895,236 - HP15_877 0.76 -2.0
895,236 - HP15_877 0.76 -0.6
895,241 - HP15_877 0.77 -0.9
895,374 + HP15_877 0.89 +2.3
895,427 + -0.7
895,438 + +2.3
895,451 - -0.3
895,484 - +2.4
895,529 + -1.7
895,537 - +2.3
895,633 - HP15_878 0.11 +0.0
895,665 - HP15_878 0.20 -0.3
895,665 - HP15_878 0.20 -0.3
895,673 + HP15_878 0.23 -0.3
895,691 + HP15_878 0.28 -0.4
895,741 - HP15_878 0.44 +1.8
895,743 - HP15_878 0.44 +0.6
895,763 + HP15_878 0.50 -1.5
895,851 + HP15_878 0.77 -0.8
895,859 - HP15_878 0.80 +2.0
895,939 - +2.1
895,939 - +0.8
896,167 - HP15_879 0.23 +0.0
896,294 - HP15_879 0.42 +1.8
896,334 + HP15_879 0.48 +0.4
896,342 - HP15_879 0.49 +0.1
896,385 - HP15_879 0.56 +0.3
896,433 + HP15_879 0.63 -0.8
896,443 - HP15_879 0.64 +1.2
896,514 + HP15_879 0.75 -0.4
896,514 + HP15_879 0.75 +0.4
896,514 + HP15_879 0.75 -1.8
896,547 + HP15_879 0.80 -1.6
896,676 - -0.3
896,917 + HP15_880 0.24 +1.9
897,091 - HP15_880 0.48 +2.3
897,129 + HP15_880 0.53 +1.4
897,189 - HP15_880 0.61 -0.2
897,278 + HP15_880 0.73 -0.6
897,281 - HP15_880 0.74 -0.3
897,288 + HP15_880 0.75 +1.8
897,296 - HP15_880 0.76 -0.4
897,326 + HP15_880 0.80 -0.3
897,345 + HP15_880 0.83 +0.1
897,345 + HP15_880 0.83 -1.7
897,353 - HP15_880 0.84 +0.1
897,353 - HP15_880 0.84 +1.9
897,353 - HP15_880 0.84 -1.0
897,353 - HP15_880 0.84 +0.1
897,448 - +1.2
897,566 + HP15_881 0.16 -0.5
897,579 - HP15_881 0.19 +2.1
897,579 - HP15_881 0.19 +0.6
897,587 + HP15_881 0.20 +1.7
897,646 - HP15_881 0.31 +0.2

Or see this region's nucleotide sequence