Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_740 and HP15_741 are separated by 226 nucleotides HP15_741 and HP15_742 are separated by 127 nucleotides
HP15_740: HP15_740 - oxidoreductase Tas, aldo/keto reductase family protein, at 748,305 to 749,342
_740
HP15_741: HP15_741 - DNA polymerase IV-like protein, at 749,569 to 749,892
_741
HP15_742: HP15_742 - acetyl-CoA hydrolase, at 750,020 to 752,230
_742
Position (kb) 749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 748.661 kb on + strand, within HP15_740 at 748.666 kb on + strand, within HP15_740 at 748.699 kb on + strand, within HP15_740 at 748.980 kb on - strand, within HP15_740 at 749.073 kb on - strand, within HP15_740 at 749.121 kb on + strand, within HP15_740 at 749.201 kb on - strand, within HP15_740 at 749.219 kb on + strand, within HP15_740 at 749.281 kb on + strand at 749.289 kb on - strand at 749.373 kb on + strand at 749.405 kb on - strand at 749.480 kb on + strand at 749.590 kb on + strand at 749.714 kb on - strand, within HP15_741 at 749.740 kb on - strand, within HP15_741 at 749.771 kb on + strand, within HP15_741 at 749.779 kb on - strand, within HP15_741 at 749.779 kb on - strand, within HP15_741 at 749.853 kb on + strand, within HP15_741 at 749.886 kb on + strand at 749.894 kb on - strand at 749.894 kb on - strand at 750.293 kb on + strand, within HP15_742 at 750.434 kb on - strand, within HP15_742 at 750.464 kb on + strand, within HP15_742 at 750.471 kb on + strand, within HP15_742 at 750.495 kb on + strand, within HP15_742 at 750.505 kb on + strand, within HP15_742 at 750.526 kb on - strand, within HP15_742 at 750.685 kb on + strand, within HP15_742 at 750.693 kb on - strand, within HP15_742 at 750.693 kb on - strand, within HP15_742 at 750.694 kb on + strand, within HP15_742 at 750.714 kb on - strand, within HP15_742 at 750.821 kb on + strand, within HP15_742 at 750.829 kb on - strand, within HP15_742
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 748,661 + HP15_740 0.34 -0.1 748,666 + HP15_740 0.35 +2.1 748,699 + HP15_740 0.38 -0.1 748,980 - HP15_740 0.65 -0.8 749,073 - HP15_740 0.74 +0.8 749,121 + HP15_740 0.79 +2.0 749,201 - HP15_740 0.86 -1.1 749,219 + HP15_740 0.88 +2.3 749,281 + -3.1 749,289 - -0.1 749,373 + +1.7 749,405 - -0.2 749,480 + -0.6 749,590 + +3.8 749,714 - HP15_741 0.45 -1.3 749,740 - HP15_741 0.53 -1.7 749,771 + HP15_741 0.62 +0.0 749,779 - HP15_741 0.65 +0.4 749,779 - HP15_741 0.65 -0.8 749,853 + HP15_741 0.88 -0.5 749,886 + -1.5 749,894 - -2.7 749,894 - -0.9 750,293 + HP15_742 0.12 +2.2 750,434 - HP15_742 0.19 +2.5 750,464 + HP15_742 0.20 -0.3 750,471 + HP15_742 0.20 -0.5 750,495 + HP15_742 0.21 +2.4 750,505 + HP15_742 0.22 -1.4 750,526 - HP15_742 0.23 -0.1 750,685 + HP15_742 0.30 +1.6 750,693 - HP15_742 0.30 +0.3 750,693 - HP15_742 0.30 -0.0 750,694 + HP15_742 0.30 +2.3 750,714 - HP15_742 0.31 -1.0 750,821 + HP15_742 0.36 +2.5 750,829 - HP15_742 0.37 +0.2
Or see this region's nucleotide sequence