Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_657 and HP15_658 overlap by 4 nucleotides HP15_658 and HP15_659 overlap by 4 nucleotides HP15_659 and HP15_660 are separated by 1 nucleotides
HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219
_657
HP15_658: HP15_658 - secreted protein-putative xanthan lyase, at 679,216 to 681,789
_658
HP15_659: HP15_659 - hypothetical protein, at 681,786 to 682,568
_659
HP15_660: HP15_660 - hypothetical protein, at 682,570 to 682,953
_660
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 678.273 kb on - strand, within HP15_657 at 678.319 kb on - strand, within HP15_657 at 678.333 kb on - strand, within HP15_657 at 678.409 kb on + strand, within HP15_657 at 678.409 kb on - strand, within HP15_657 at 678.466 kb on + strand, within HP15_657 at 678.479 kb on - strand, within HP15_657 at 678.500 kb on + strand, within HP15_657 at 678.505 kb on + strand, within HP15_657 at 678.515 kb on + strand, within HP15_657 at 678.560 kb on - strand, within HP15_657 at 678.624 kb on + strand, within HP15_657 at 678.624 kb on + strand, within HP15_657 at 678.664 kb on + strand, within HP15_657 at 678.664 kb on + strand, within HP15_657 at 678.779 kb on - strand, within HP15_657 at 678.826 kb on + strand, within HP15_657 at 678.853 kb on + strand, within HP15_657 at 678.900 kb on - strand, within HP15_657 at 678.964 kb on + strand, within HP15_657 at 678.995 kb on - strand, within HP15_657 at 679.085 kb on + strand at 679.107 kb on - strand at 679.233 kb on + strand at 679.244 kb on + strand at 679.312 kb on + strand at 679.463 kb on + strand at 679.619 kb on - strand, within HP15_658 at 679.798 kb on - strand, within HP15_658 at 679.825 kb on + strand, within HP15_658 at 679.833 kb on - strand, within HP15_658 at 679.833 kb on - strand, within HP15_658 at 679.833 kb on - strand, within HP15_658 at 679.925 kb on + strand, within HP15_658 at 679.942 kb on + strand, within HP15_658 at 679.942 kb on + strand, within HP15_658 at 679.950 kb on - strand, within HP15_658 at 679.950 kb on - strand, within HP15_658 at 679.965 kb on - strand, within HP15_658 at 680.160 kb on - strand, within HP15_658 at 680.160 kb on - strand, within HP15_658 at 680.166 kb on - strand, within HP15_658 at 680.199 kb on + strand, within HP15_658 at 680.199 kb on + strand, within HP15_658 at 680.199 kb on + strand, within HP15_658 at 680.207 kb on - strand, within HP15_658 at 680.257 kb on + strand, within HP15_658 at 680.265 kb on + strand, within HP15_658 at 680.273 kb on - strand, within HP15_658 at 680.273 kb on - strand, within HP15_658 at 680.609 kb on + strand, within HP15_658 at 680.625 kb on - strand, within HP15_658 at 680.632 kb on - strand, within HP15_658 at 680.668 kb on - strand, within HP15_658 at 680.681 kb on + strand, within HP15_658 at 680.705 kb on + strand, within HP15_658 at 680.717 kb on + strand, within HP15_658 at 680.720 kb on + strand, within HP15_658 at 680.739 kb on - strand, within HP15_658 at 680.742 kb on + strand, within HP15_658 at 680.742 kb on + strand, within HP15_658 at 680.742 kb on + strand, within HP15_658 at 680.743 kb on + strand, within HP15_658 at 680.748 kb on - strand, within HP15_658 at 680.750 kb on - strand, within HP15_658 at 680.873 kb on - strand, within HP15_658 at 680.947 kb on - strand, within HP15_658 at 681.011 kb on - strand, within HP15_658 at 681.025 kb on - strand, within HP15_658 at 681.081 kb on + strand, within HP15_658 at 681.160 kb on + strand, within HP15_658 at 681.168 kb on - strand, within HP15_658 at 681.217 kb on + strand, within HP15_658 at 681.217 kb on + strand, within HP15_658 at 681.225 kb on - strand, within HP15_658 at 681.256 kb on + strand, within HP15_658 at 681.304 kb on + strand, within HP15_658 at 681.304 kb on + strand, within HP15_658 at 681.312 kb on - strand, within HP15_658 at 681.312 kb on - strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.365 kb on + strand, within HP15_658 at 681.381 kb on - strand, within HP15_658 at 681.396 kb on - strand, within HP15_658 at 681.414 kb on - strand, within HP15_658 at 681.511 kb on - strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.574 kb on + strand at 681.605 kb on + strand at 681.646 kb on + strand at 681.646 kb on + strand at 681.705 kb on - strand at 681.736 kb on + strand at 681.771 kb on - strand at 681.771 kb on - strand at 681.962 kb on + strand, within HP15_659 at 681.977 kb on + strand, within HP15_659 at 682.165 kb on + strand, within HP15_659 at 682.175 kb on + strand, within HP15_659 at 682.324 kb on - strand, within HP15_659 at 682.325 kb on - strand, within HP15_659 at 682.338 kb on + strand, within HP15_659 at 682.359 kb on - strand, within HP15_659 at 682.417 kb on + strand, within HP15_659 at 682.514 kb on + strand at 682.554 kb on + strand at 682.573 kb on + strand at 682.573 kb on + strand at 682.581 kb on - strand at 682.581 kb on - strand at 682.639 kb on + strand, within HP15_660 at 682.640 kb on + strand, within HP15_660 at 682.644 kb on + strand, within HP15_660
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 678,273 - HP15_657 0.34 -0.1 678,319 - HP15_657 0.37 +0.3 678,333 - HP15_657 0.38 -0.7 678,409 + HP15_657 0.44 +0.1 678,409 - HP15_657 0.44 +0.2 678,466 + HP15_657 0.48 +2.5 678,479 - HP15_657 0.48 +0.8 678,500 + HP15_657 0.50 -0.3 678,505 + HP15_657 0.50 +2.2 678,515 + HP15_657 0.51 +1.6 678,560 - HP15_657 0.54 -0.1 678,624 + HP15_657 0.59 +0.8 678,624 + HP15_657 0.59 +0.1 678,664 + HP15_657 0.61 +1.5 678,664 + HP15_657 0.61 +0.5 678,779 - HP15_657 0.69 +0.0 678,826 + HP15_657 0.73 +2.2 678,853 + HP15_657 0.74 +2.2 678,900 - HP15_657 0.78 -1.5 678,964 + HP15_657 0.82 +0.3 678,995 - HP15_657 0.84 +1.1 679,085 + +1.0 679,107 - +0.1 679,233 + -0.6 679,244 + -0.6 679,312 + -0.0 679,463 + -1.5 679,619 - HP15_658 0.16 +1.5 679,798 - HP15_658 0.23 +0.2 679,825 + HP15_658 0.24 -1.1 679,833 - HP15_658 0.24 +0.9 679,833 - HP15_658 0.24 +2.1 679,833 - HP15_658 0.24 +3.5 679,925 + HP15_658 0.28 +0.0 679,942 + HP15_658 0.28 +2.3 679,942 + HP15_658 0.28 -0.5 679,950 - HP15_658 0.29 +0.2 679,950 - HP15_658 0.29 +1.0 679,965 - HP15_658 0.29 +0.1 680,160 - HP15_658 0.37 +2.7 680,160 - HP15_658 0.37 +2.8 680,166 - HP15_658 0.37 +0.5 680,199 + HP15_658 0.38 +2.5 680,199 + HP15_658 0.38 +1.2 680,199 + HP15_658 0.38 +2.2 680,207 - HP15_658 0.39 -0.2 680,257 + HP15_658 0.40 +2.4 680,265 + HP15_658 0.41 +0.1 680,273 - HP15_658 0.41 +4.4 680,273 - HP15_658 0.41 +0.9 680,609 + HP15_658 0.54 -0.6 680,625 - HP15_658 0.55 -0.5 680,632 - HP15_658 0.55 +0.9 680,668 - HP15_658 0.56 -0.4 680,681 + HP15_658 0.57 +2.3 680,705 + HP15_658 0.58 +0.6 680,717 + HP15_658 0.58 +1.5 680,720 + HP15_658 0.58 +0.8 680,739 - HP15_658 0.59 +1.0 680,742 + HP15_658 0.59 +0.5 680,742 + HP15_658 0.59 +2.7 680,742 + HP15_658 0.59 -0.5 680,743 + HP15_658 0.59 +0.2 680,748 - HP15_658 0.60 -0.9 680,750 - HP15_658 0.60 +0.9 680,873 - HP15_658 0.64 +2.2 680,947 - HP15_658 0.67 +2.3 681,011 - HP15_658 0.70 -1.5 681,025 - HP15_658 0.70 +0.1 681,081 + HP15_658 0.72 -0.3 681,160 + HP15_658 0.76 +0.1 681,168 - HP15_658 0.76 -0.1 681,217 + HP15_658 0.78 -0.3 681,217 + HP15_658 0.78 +2.0 681,225 - HP15_658 0.78 +2.2 681,256 + HP15_658 0.79 +2.4 681,304 + HP15_658 0.81 +2.0 681,304 + HP15_658 0.81 +0.9 681,312 - HP15_658 0.81 -0.0 681,312 - HP15_658 0.81 +5.5 681,321 + HP15_658 0.82 +0.3 681,321 + HP15_658 0.82 +1.2 681,321 + HP15_658 0.82 +1.8 681,365 + HP15_658 0.83 -0.6 681,381 - HP15_658 0.84 +2.8 681,396 - HP15_658 0.85 +1.3 681,414 - HP15_658 0.85 +1.5 681,511 - HP15_658 0.89 +2.3 681,513 + HP15_658 0.89 +0.8 681,513 + HP15_658 0.89 +2.2 681,513 + HP15_658 0.89 -0.3 681,513 + HP15_658 0.89 +1.2 681,521 - HP15_658 0.90 +0.3 681,521 - HP15_658 0.90 +0.2 681,521 - HP15_658 0.90 -0.8 681,574 + -1.1 681,605 + +0.5 681,646 + +0.4 681,646 + +2.2 681,705 - +0.6 681,736 + -0.0 681,771 - -0.7 681,771 - -1.1 681,962 + HP15_659 0.22 -1.3 681,977 + HP15_659 0.24 +3.0 682,165 + HP15_659 0.48 +0.4 682,175 + HP15_659 0.50 +2.3 682,324 - HP15_659 0.69 +3.4 682,325 - HP15_659 0.69 +1.3 682,338 + HP15_659 0.70 -1.0 682,359 - HP15_659 0.73 -0.0 682,417 + HP15_659 0.81 -0.5 682,514 + -1.0 682,554 + +0.8 682,573 + +1.9 682,573 + +0.8 682,581 - -0.1 682,581 - +0.3 682,639 + HP15_660 0.18 -0.1 682,640 + HP15_660 0.18 +3.7 682,644 + HP15_660 0.19 +0.6
Or see this region's nucleotide sequence