Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_590 and HP15_591 are separated by 147 nucleotides HP15_591 and HP15_592 are separated by 75 nucleotides HP15_592 and HP15_593 are separated by 127 nucleotides HP15_593 and HP15_594 are separated by 122 nucleotides HP15_594 and HP15_595 are separated by 73 nucleotides
HP15_590: HP15_590 - haloalkane dehalogenase, at 611,012 to 611,911
_590
HP15_591: HP15_591 - conserved hypothetical protein, at 612,059 to 612,307
_591
HP15_592: HP15_592 - conserved hypothetical protein, at 612,383 to 612,733
_592
HP15_593: HP15_593 - protein belonging to uncharacterized protein family UPF0118, at 612,861 to 613,976
_593
HP15_594: HP15_594 - peptidoglycan-binding domain 1 protein-like protein, at 614,099 to 614,518
_594
HP15_595: HP15_595 - dihydroxy-acid dehydratase, at 614,592 to 616,385
_595
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.041 kb on - strand at 612.051 kb on - strand at 612.109 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.149 kb on + strand, within HP15_591 at 612.162 kb on + strand, within HP15_591 at 612.240 kb on + strand, within HP15_591 at 612.269 kb on - strand, within HP15_591 at 612.285 kb on - strand at 612.293 kb on - strand at 612.334 kb on - strand at 612.405 kb on + strand at 612.450 kb on - strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.507 kb on - strand, within HP15_592 at 612.558 kb on + strand, within HP15_592 at 612.659 kb on + strand, within HP15_592 at 612.660 kb on + strand, within HP15_592 at 612.667 kb on - strand, within HP15_592 at 612.816 kb on - strand at 612.816 kb on - strand at 612.848 kb on - strand at 613.139 kb on + strand, within HP15_593 at 613.166 kb on + strand, within HP15_593 at 613.203 kb on + strand, within HP15_593 at 613.219 kb on - strand, within HP15_593 at 613.225 kb on - strand, within HP15_593 at 613.427 kb on - strand, within HP15_593 at 613.467 kb on + strand, within HP15_593 at 613.467 kb on + strand, within HP15_593 at 613.468 kb on - strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.740 kb on + strand, within HP15_593 at 613.743 kb on - strand, within HP15_593 at 613.782 kb on - strand, within HP15_593 at 613.864 kb on - strand, within HP15_593 at 613.909 kb on + strand at 613.929 kb on + strand at 614.021 kb on - strand at 614.032 kb on + strand at 614.072 kb on + strand at 614.225 kb on + strand, within HP15_594 at 614.225 kb on + strand, within HP15_594 at 614.225 kb on + strand, within HP15_594 at 614.417 kb on + strand, within HP15_594 at 614.715 kb on + strand at 614.875 kb on - strand, within HP15_595 at 614.908 kb on + strand, within HP15_595
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 612,041 - +1.5 612,051 - +2.1 612,109 - HP15_591 0.20 -0.4 612,145 - HP15_591 0.35 -1.1 612,145 - HP15_591 0.35 +2.8 612,149 + HP15_591 0.36 -1.9 612,162 + HP15_591 0.41 -1.0 612,240 + HP15_591 0.73 -0.3 612,269 - HP15_591 0.84 -0.5 612,285 - -0.3 612,293 - +0.7 612,334 - +1.9 612,405 + +2.3 612,450 - HP15_592 0.19 +0.6 612,499 + HP15_592 0.33 -2.5 612,499 + HP15_592 0.33 +1.8 612,507 - HP15_592 0.35 +1.7 612,558 + HP15_592 0.50 +2.0 612,659 + HP15_592 0.79 +1.8 612,660 + HP15_592 0.79 +2.4 612,667 - HP15_592 0.81 -0.1 612,816 - -0.4 612,816 - +1.9 612,848 - -1.3 613,139 + HP15_593 0.25 +0.2 613,166 + HP15_593 0.27 -0.1 613,203 + HP15_593 0.31 +0.6 613,219 - HP15_593 0.32 -3.2 613,225 - HP15_593 0.33 -2.0 613,427 - HP15_593 0.51 +2.1 613,467 + HP15_593 0.54 +0.3 613,467 + HP15_593 0.54 -1.8 613,468 - HP15_593 0.54 -0.4 613,568 + HP15_593 0.63 -0.1 613,568 + HP15_593 0.63 -0.8 613,568 + HP15_593 0.63 +0.0 613,568 + HP15_593 0.63 -0.7 613,576 - HP15_593 0.64 +0.1 613,576 - HP15_593 0.64 +1.8 613,576 - HP15_593 0.64 -0.9 613,576 - HP15_593 0.64 -0.7 613,740 + HP15_593 0.79 +2.2 613,743 - HP15_593 0.79 -3.0 613,782 - HP15_593 0.83 +0.9 613,864 - HP15_593 0.90 -1.1 613,909 + -0.5 613,929 + -0.2 614,021 - +0.3 614,032 + -0.0 614,072 + +0.2 614,225 + HP15_594 0.30 +2.0 614,225 + HP15_594 0.30 +2.2 614,225 + HP15_594 0.30 -0.8 614,417 + HP15_594 0.76 +1.9 614,715 + +1.5 614,875 - HP15_595 0.16 +2.7 614,908 + HP15_595 0.18 +1.3
Or see this region's nucleotide sequence