Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_444 and HP15_445 are separated by 131 nucleotides HP15_445 and HP15_446 are separated by 23 nucleotides HP15_446 and HP15_447 overlap by 4 nucleotides
HP15_444: HP15_444 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 447,850 to 449,271
_444
HP15_445: HP15_445 - beta 1,4 glucosyltransferase, at 449,403 to 450,197
_445
HP15_446: HP15_446 - glycosyltransferase, at 450,221 to 451,276
_446
HP15_447: HP15_447 - glycosyltransferase, at 451,273 to 452,388
_447
Position (kb) 450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 449.436 kb on - strand at 449.526 kb on - strand, within HP15_445 at 449.583 kb on + strand, within HP15_445 at 449.584 kb on - strand, within HP15_445 at 449.680 kb on - strand, within HP15_445 at 449.870 kb on + strand, within HP15_445 at 449.870 kb on + strand, within HP15_445 at 449.878 kb on - strand, within HP15_445 at 449.878 kb on - strand, within HP15_445 at 449.883 kb on - strand, within HP15_445 at 449.915 kb on - strand, within HP15_445 at 450.154 kb on - strand at 450.156 kb on + strand at 450.204 kb on + strand at 450.204 kb on + strand at 450.334 kb on + strand, within HP15_446 at 450.334 kb on + strand, within HP15_446 at 450.342 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.391 kb on - strand, within HP15_446 at 450.443 kb on + strand, within HP15_446 at 450.465 kb on - strand, within HP15_446 at 450.485 kb on + strand, within HP15_446 at 450.516 kb on + strand, within HP15_446 at 450.542 kb on + strand, within HP15_446 at 450.550 kb on - strand, within HP15_446 at 450.553 kb on - strand, within HP15_446 at 450.611 kb on + strand, within HP15_446 at 450.701 kb on - strand, within HP15_446 at 450.702 kb on + strand, within HP15_446 at 450.707 kb on - strand, within HP15_446 at 450.707 kb on - strand, within HP15_446 at 450.763 kb on + strand, within HP15_446 at 450.783 kb on - strand, within HP15_446 at 450.823 kb on - strand, within HP15_446 at 450.918 kb on - strand, within HP15_446 at 450.937 kb on - strand, within HP15_446 at 450.990 kb on + strand, within HP15_446 at 451.087 kb on - strand, within HP15_446 at 451.236 kb on + strand at 451.294 kb on + strand at 451.424 kb on - strand, within HP15_447 at 451.558 kb on - strand, within HP15_447 at 451.650 kb on - strand, within HP15_447 at 451.673 kb on + strand, within HP15_447 at 451.695 kb on + strand, within HP15_447 at 451.710 kb on + strand, within HP15_447 at 451.718 kb on - strand, within HP15_447 at 451.894 kb on + strand, within HP15_447 at 451.998 kb on - strand, within HP15_447 at 452.020 kb on + strand, within HP15_447 at 452.139 kb on - strand, within HP15_447
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 449,436 - -2.2 449,526 - HP15_445 0.15 -0.4 449,583 + HP15_445 0.23 +2.5 449,584 - HP15_445 0.23 +2.8 449,680 - HP15_445 0.35 -0.5 449,870 + HP15_445 0.59 -1.2 449,870 + HP15_445 0.59 +1.8 449,878 - HP15_445 0.60 +2.7 449,878 - HP15_445 0.60 -0.5 449,883 - HP15_445 0.60 +1.6 449,915 - HP15_445 0.64 +2.2 450,154 - +0.5 450,156 + -0.1 450,204 + +2.0 450,204 + -0.6 450,334 + HP15_446 0.11 +1.8 450,334 + HP15_446 0.11 +1.9 450,342 - HP15_446 0.11 -0.3 450,352 - HP15_446 0.12 -0.4 450,352 - HP15_446 0.12 -0.2 450,352 - HP15_446 0.12 -1.5 450,391 - HP15_446 0.16 +0.4 450,443 + HP15_446 0.21 +0.7 450,465 - HP15_446 0.23 -0.7 450,485 + HP15_446 0.25 -0.9 450,516 + HP15_446 0.28 +1.3 450,542 + HP15_446 0.30 +0.3 450,550 - HP15_446 0.31 -0.4 450,553 - HP15_446 0.31 -0.3 450,611 + HP15_446 0.37 +0.3 450,701 - HP15_446 0.45 +1.7 450,702 + HP15_446 0.46 -0.8 450,707 - HP15_446 0.46 -0.9 450,707 - HP15_446 0.46 +0.5 450,763 + HP15_446 0.51 -1.4 450,783 - HP15_446 0.53 +2.7 450,823 - HP15_446 0.57 +2.1 450,918 - HP15_446 0.66 -0.2 450,937 - HP15_446 0.68 -0.2 450,990 + HP15_446 0.73 -0.6 451,087 - HP15_446 0.82 +0.4 451,236 + -3.3 451,294 + +0.8 451,424 - HP15_447 0.14 +1.7 451,558 - HP15_447 0.26 +2.0 451,650 - HP15_447 0.34 -1.5 451,673 + HP15_447 0.36 +1.9 451,695 + HP15_447 0.38 -1.5 451,710 + HP15_447 0.39 -0.5 451,718 - HP15_447 0.40 -0.8 451,894 + HP15_447 0.56 +1.4 451,998 - HP15_447 0.65 -1.8 452,020 + HP15_447 0.67 -0.5 452,139 - HP15_447 0.78 +0.2
Or see this region's nucleotide sequence