Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g19 and HP15_p187g20 are separated by 148 nucleotides HP15_p187g20 and HP15_p187g21 are separated by 894 nucleotides
HP15_p187g19: HP15_p187g19 - deoxyribodipyrimidine photolyase, at 16,671 to 18,188
_p187g19
HP15_p187g20: HP15_p187g20 - hypothetical protein, at 18,337 to 18,453
_p187g20
HP15_p187g21: HP15_p187g21 - hypothetical protein, at 19,348 to 19,467
_p187g21
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 17.340 kb on + strand, within HP15_p187g19 at 17.369 kb on - strand, within HP15_p187g19 at 17.417 kb on + strand, within HP15_p187g19 at 17.463 kb on - strand, within HP15_p187g19 at 17.510 kb on + strand, within HP15_p187g19 at 17.523 kb on - strand, within HP15_p187g19 at 17.554 kb on - strand, within HP15_p187g19 at 17.630 kb on + strand, within HP15_p187g19 at 17.630 kb on + strand, within HP15_p187g19 at 17.630 kb on + strand, within HP15_p187g19 at 17.638 kb on - strand, within HP15_p187g19 at 17.689 kb on + strand, within HP15_p187g19 at 17.720 kb on + strand, within HP15_p187g19 at 17.728 kb on - strand, within HP15_p187g19 at 17.731 kb on + strand, within HP15_p187g19 at 17.735 kb on + strand, within HP15_p187g19 at 17.844 kb on - strand, within HP15_p187g19 at 17.883 kb on - strand, within HP15_p187g19 at 17.893 kb on - strand, within HP15_p187g19 at 17.893 kb on - strand, within HP15_p187g19 at 17.900 kb on - strand, within HP15_p187g19 at 17.956 kb on + strand, within HP15_p187g19 at 17.961 kb on + strand, within HP15_p187g19 at 17.962 kb on - strand, within HP15_p187g19 at 17.963 kb on + strand, within HP15_p187g19 at 17.967 kb on - strand, within HP15_p187g19 at 17.969 kb on - strand, within HP15_p187g19 at 18.023 kb on - strand, within HP15_p187g19 at 18.035 kb on + strand, within HP15_p187g19 at 18.061 kb on - strand at 18.076 kb on - strand at 18.091 kb on - strand at 18.096 kb on + strand at 18.106 kb on + strand at 18.116 kb on + strand at 18.116 kb on - strand at 18.123 kb on + strand at 18.131 kb on - strand at 18.137 kb on - strand at 18.183 kb on + strand at 18.183 kb on + strand at 18.183 kb on + strand at 18.183 kb on + strand at 18.191 kb on - strand at 18.191 kb on - strand at 18.241 kb on + strand at 18.246 kb on + strand at 18.254 kb on - strand at 18.281 kb on - strand at 18.379 kb on + strand, within HP15_p187g20 at 18.393 kb on - strand, within HP15_p187g20 at 18.393 kb on - strand, within HP15_p187g20 at 18.415 kb on - strand, within HP15_p187g20 at 18.508 kb on - strand at 18.677 kb on + strand at 18.685 kb on - strand at 18.701 kb on - strand at 18.706 kb on - strand at 18.711 kb on + strand at 18.717 kb on + strand at 18.741 kb on + strand at 18.906 kb on + strand at 18.913 kb on - strand at 18.973 kb on + strand at 19.006 kb on + strand at 19.006 kb on + strand at 19.024 kb on - strand at 19.044 kb on - strand at 19.055 kb on + strand at 19.060 kb on + strand at 19.060 kb on + strand at 19.060 kb on + strand at 19.060 kb on + strand at 19.065 kb on + strand at 19.065 kb on + strand at 19.073 kb on - strand at 19.084 kb on - strand at 19.090 kb on + strand at 19.097 kb on - strand at 19.100 kb on + strand at 19.112 kb on + strand at 19.121 kb on - strand at 19.131 kb on - strand at 19.131 kb on - strand at 19.176 kb on - strand at 19.180 kb on + strand at 19.188 kb on - strand at 19.207 kb on + strand at 19.215 kb on - strand at 19.215 kb on - strand at 19.239 kb on - strand at 19.288 kb on + strand at 19.302 kb on - strand at 19.316 kb on - strand at 19.338 kb on + strand at 19.346 kb on - strand at 19.346 kb on - strand at 19.346 kb on - strand at 19.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 17,340 + HP15_p187g19 0.44 +0.2 17,369 - HP15_p187g19 0.46 +2.0 17,417 + HP15_p187g19 0.49 +0.9 17,463 - HP15_p187g19 0.52 +0.7 17,510 + HP15_p187g19 0.55 +0.4 17,523 - HP15_p187g19 0.56 -3.5 17,554 - HP15_p187g19 0.58 -0.3 17,630 + HP15_p187g19 0.63 +0.2 17,630 + HP15_p187g19 0.63 -3.6 17,630 + HP15_p187g19 0.63 +1.1 17,638 - HP15_p187g19 0.64 -2.2 17,689 + HP15_p187g19 0.67 +1.5 17,720 + HP15_p187g19 0.69 +0.5 17,728 - HP15_p187g19 0.70 -0.2 17,731 + HP15_p187g19 0.70 +1.9 17,735 + HP15_p187g19 0.70 -0.5 17,844 - HP15_p187g19 0.77 -2.4 17,883 - HP15_p187g19 0.80 -2.0 17,893 - HP15_p187g19 0.81 +0.6 17,893 - HP15_p187g19 0.81 +2.6 17,900 - HP15_p187g19 0.81 +1.1 17,956 + HP15_p187g19 0.85 -0.8 17,961 + HP15_p187g19 0.85 -1.3 17,962 - HP15_p187g19 0.85 -0.8 17,963 + HP15_p187g19 0.85 -0.3 17,967 - HP15_p187g19 0.85 +1.4 17,969 - HP15_p187g19 0.86 +0.2 18,023 - HP15_p187g19 0.89 -0.7 18,035 + HP15_p187g19 0.90 -0.7 18,061 - +1.1 18,076 - +2.1 18,091 - -1.1 18,096 + -0.6 18,106 + +0.0 18,116 + -0.4 18,116 - -0.7 18,123 + -1.3 18,131 - -0.9 18,137 - -0.1 18,183 + +1.8 18,183 + +2.8 18,183 + +1.9 18,183 + -1.0 18,191 - -0.1 18,191 - -0.6 18,241 + +1.4 18,246 + +0.0 18,254 - -1.6 18,281 - -2.4 18,379 + HP15_p187g20 0.36 +2.1 18,393 - HP15_p187g20 0.48 +0.3 18,393 - HP15_p187g20 0.48 +1.9 18,415 - HP15_p187g20 0.67 +0.2 18,508 - -0.1 18,677 + -2.0 18,685 - +0.9 18,701 - -0.1 18,706 - -1.5 18,711 + +2.1 18,717 + +0.1 18,741 + -0.1 18,906 + -1.2 18,913 - +2.3 18,973 + +0.1 19,006 + +1.6 19,006 + +2.1 19,024 - -0.7 19,044 - -1.7 19,055 + -1.4 19,060 + +2.2 19,060 + +0.3 19,060 + -0.5 19,060 + -2.1 19,065 + +2.4 19,065 + -1.1 19,073 - -0.1 19,084 - +0.6 19,090 + -3.2 19,097 - -0.2 19,100 + -0.0 19,112 + -0.8 19,121 - +0.1 19,131 - -0.5 19,131 - +0.3 19,176 - +2.1 19,180 + +0.1 19,188 - -2.0 19,207 + +0.5 19,215 - -0.2 19,215 - -0.2 19,239 - -0.8 19,288 + -0.4 19,302 - -0.3 19,316 - -0.8 19,338 + -0.2 19,346 - +2.2 19,346 - +1.9 19,346 - +3.6 19,352 + +0.1
Or see this region's nucleotide sequence