Strain Fitness in Marinobacter adhaerens HP15 around HP15_3554

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3552 and HP15_3553 are separated by 61 nucleotidesHP15_3553 and HP15_3554 are separated by 300 nucleotidesHP15_3554 and HP15_3555 are separated by 17 nucleotidesHP15_3555 and HP15_3556 overlap by 17 nucleotides HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706 _3552 HP15_3553: HP15_3553 - conserved hypothetical protein, at 3,743,768 to 3,743,968 _3553 HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750 _3554 HP15_3555: HP15_3555 - membrane lipoprotein lipid attachment site-like protein, at 3,745,768 to 3,746,409 _3555 HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637 _3556 Position (kb) 3744 3745 3746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3743.282 kb on - strand, within HP15_3552at 3743.344 kb on + strand, within HP15_3552at 3743.344 kb on + strand, within HP15_3552at 3743.383 kb on - strand, within HP15_3552at 3743.444 kb on + strand, within HP15_3552at 3743.452 kb on + strand, within HP15_3552at 3743.534 kb on + strandat 3743.542 kb on - strandat 3743.880 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.905 kb on - strand, within HP15_3553at 3744.132 kb on + strandat 3744.250 kb on + strandat 3744.274 kb on + strandat 3744.311 kb on - strandat 3744.348 kb on - strandat 3744.373 kb on - strandat 3745.244 kb on - strand, within HP15_3554at 3745.676 kb on - strandat 3746.591 kb on + strand, within HP15_3556

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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3,743,282 - HP15_3552 0.79 +2.0
3,743,344 + HP15_3552 0.82 +0.6
3,743,344 + HP15_3552 0.82 +1.6
3,743,383 - HP15_3552 0.84 -0.1
3,743,444 + HP15_3552 0.87 +2.4
3,743,452 + HP15_3552 0.87 +2.1
3,743,534 + +1.0
3,743,542 - -1.2
3,743,880 + HP15_3553 0.56 +0.2
3,743,897 + HP15_3553 0.64 -1.5
3,743,897 + HP15_3553 0.64 +2.2
3,743,897 + HP15_3553 0.64 +1.7
3,743,897 + HP15_3553 0.64 -1.4
3,743,897 + HP15_3553 0.64 -0.7
3,743,905 - HP15_3553 0.68 -0.4
3,744,132 + -1.3
3,744,250 + +0.6
3,744,274 + +0.5
3,744,311 - -0.7
3,744,348 - -1.9
3,744,373 - +2.8
3,745,244 - HP15_3554 0.66 -1.1
3,745,676 - -0.7
3,746,591 + HP15_3556 0.16 +2.6

Or see this region's nucleotide sequence