Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3552 and HP15_3553 are separated by 61 nucleotides HP15_3553 and HP15_3554 are separated by 300 nucleotides HP15_3554 and HP15_3555 are separated by 17 nucleotides HP15_3555 and HP15_3556 overlap by 17 nucleotides
HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706
_3552
HP15_3553: HP15_3553 - conserved hypothetical protein, at 3,743,768 to 3,743,968
_3553
HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750
_3554
HP15_3555: HP15_3555 - membrane lipoprotein lipid attachment site-like protein, at 3,745,768 to 3,746,409
_3555
HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637
_3556
Position (kb)
3744
3745
3746 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3743.282 kb on - strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.383 kb on - strand, within HP15_3552 at 3743.444 kb on + strand, within HP15_3552 at 3743.452 kb on + strand, within HP15_3552 at 3743.534 kb on + strand at 3743.542 kb on - strand at 3743.880 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.905 kb on - strand, within HP15_3553 at 3744.132 kb on + strand at 3744.250 kb on + strand at 3744.274 kb on + strand at 3744.311 kb on - strand at 3744.348 kb on - strand at 3744.373 kb on - strand at 3745.244 kb on - strand, within HP15_3554 at 3745.676 kb on - strand at 3746.591 kb on + strand, within HP15_3556
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 3,743,282 - HP15_3552 0.79 +2.0 3,743,344 + HP15_3552 0.82 +0.6 3,743,344 + HP15_3552 0.82 +1.6 3,743,383 - HP15_3552 0.84 -0.1 3,743,444 + HP15_3552 0.87 +2.4 3,743,452 + HP15_3552 0.87 +2.1 3,743,534 + +1.0 3,743,542 - -1.2 3,743,880 + HP15_3553 0.56 +0.2 3,743,897 + HP15_3553 0.64 -1.5 3,743,897 + HP15_3553 0.64 +2.2 3,743,897 + HP15_3553 0.64 +1.7 3,743,897 + HP15_3553 0.64 -1.4 3,743,897 + HP15_3553 0.64 -0.7 3,743,905 - HP15_3553 0.68 -0.4 3,744,132 + -1.3 3,744,250 + +0.6 3,744,274 + +0.5 3,744,311 - -0.7 3,744,348 - -1.9 3,744,373 - +2.8 3,745,244 - HP15_3554 0.66 -1.1 3,745,676 - -0.7 3,746,591 + HP15_3556 0.16 +2.6
Or see this region's nucleotide sequence