Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2834 and HP15_2835 are separated by 282 nucleotides HP15_2835 and HP15_2836 are separated by 91 nucleotides HP15_2836 and HP15_2837 are separated by 238 nucleotides HP15_2837 and HP15_2838 are separated by 228 nucleotides
HP15_2834: HP15_2834 - OmpA/MotB domain protein, at 2,977,362 to 2,978,171
_2834
HP15_2835: HP15_2835 - cold shock, CspA, at 2,978,454 to 2,978,660
_2835
HP15_2836: HP15_2836 - conserved hypothetical protein, membrane, at 2,978,752 to 2,979,126
_2836
HP15_2837: HP15_2837 - conserved hypothetical protein, at 2,979,365 to 2,979,586
_2837
HP15_2838: HP15_2838 - oxidoreductase, short chain dehydrogenase/reductase family-like protein, at 2,979,815 to 2,980,588
_2838
Position (kb)
2978
2979
2980 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2977.787 kb on + strand, within HP15_2834 at 2977.794 kb on - strand, within HP15_2834 at 2977.807 kb on + strand, within HP15_2834 at 2977.812 kb on + strand, within HP15_2834 at 2977.849 kb on + strand, within HP15_2834 at 2977.856 kb on + strand, within HP15_2834 at 2977.864 kb on - strand, within HP15_2834 at 2977.945 kb on - strand, within HP15_2834 at 2977.949 kb on + strand, within HP15_2834 at 2977.980 kb on - strand, within HP15_2834 at 2977.988 kb on + strand, within HP15_2834 at 2978.002 kb on - strand, within HP15_2834 at 2978.010 kb on - strand, within HP15_2834 at 2978.039 kb on + strand, within HP15_2834 at 2978.184 kb on + strand at 2978.186 kb on - strand at 2978.287 kb on - strand at 2978.287 kb on - strand at 2978.296 kb on + strand at 2978.325 kb on - strand at 2978.525 kb on - strand, within HP15_2835 at 2978.525 kb on - strand, within HP15_2835 at 2978.555 kb on + strand, within HP15_2835 at 2978.597 kb on - strand, within HP15_2835 at 2978.665 kb on - strand at 2978.691 kb on + strand at 2978.699 kb on - strand at 2978.700 kb on - strand at 2978.700 kb on - strand at 2978.758 kb on - strand at 2978.758 kb on - strand at 2978.859 kb on + strand, within HP15_2836 at 2978.867 kb on - strand, within HP15_2836 at 2978.883 kb on - strand, within HP15_2836 at 2978.962 kb on + strand, within HP15_2836 at 2978.994 kb on - strand, within HP15_2836 at 2979.211 kb on - strand at 2979.278 kb on + strand at 2979.313 kb on - strand at 2979.366 kb on - strand at 2979.470 kb on + strand, within HP15_2837 at 2979.515 kb on + strand, within HP15_2837 at 2979.523 kb on - strand, within HP15_2837 at 2979.671 kb on + strand at 2979.671 kb on + strand at 2979.683 kb on + strand at 2979.702 kb on - strand at 2979.704 kb on + strand at 2979.830 kb on - strand at 2979.945 kb on - strand, within HP15_2838
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 2,977,787 + HP15_2834 0.52 -1.1 2,977,794 - HP15_2834 0.53 -0.7 2,977,807 + HP15_2834 0.55 -0.7 2,977,812 + HP15_2834 0.56 +2.0 2,977,849 + HP15_2834 0.60 -0.6 2,977,856 + HP15_2834 0.61 -0.7 2,977,864 - HP15_2834 0.62 +2.6 2,977,945 - HP15_2834 0.72 -1.2 2,977,949 + HP15_2834 0.72 -2.8 2,977,980 - HP15_2834 0.76 +2.3 2,977,988 + HP15_2834 0.77 +0.6 2,978,002 - HP15_2834 0.79 -0.1 2,978,010 - HP15_2834 0.80 -0.8 2,978,039 + HP15_2834 0.84 +2.2 2,978,184 + -1.5 2,978,186 - +0.9 2,978,287 - +3.0 2,978,287 - +0.1 2,978,296 + -0.1 2,978,325 - -0.5 2,978,525 - HP15_2835 0.34 +1.8 2,978,525 - HP15_2835 0.34 -0.1 2,978,555 + HP15_2835 0.49 +2.3 2,978,597 - HP15_2835 0.69 +1.0 2,978,665 - -0.1 2,978,691 + -0.6 2,978,699 - -2.7 2,978,700 - +0.5 2,978,700 - +0.3 2,978,758 - +2.8 2,978,758 - +0.7 2,978,859 + HP15_2836 0.29 +1.8 2,978,867 - HP15_2836 0.31 -0.9 2,978,883 - HP15_2836 0.35 +2.7 2,978,962 + HP15_2836 0.56 -0.4 2,978,994 - HP15_2836 0.65 +0.1 2,979,211 - +2.0 2,979,278 + +1.0 2,979,313 - -1.4 2,979,366 - -0.8 2,979,470 + HP15_2837 0.47 +0.4 2,979,515 + HP15_2837 0.68 -0.3 2,979,523 - HP15_2837 0.71 +1.1 2,979,671 + +0.3 2,979,671 + -0.4 2,979,683 + -0.2 2,979,702 - -0.0 2,979,704 + +1.2 2,979,830 - -1.2 2,979,945 - HP15_2838 0.17 -0.1
Or see this region's nucleotide sequence