Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2731 and HP15_2732 are separated by 210 nucleotides HP15_2732 and HP15_2733 are separated by 200 nucleotides
HP15_2731: HP15_2731 - choline/carnitine/betaine transporter, at 2,882,201 to 2,883,685
_2731
HP15_2732: HP15_2732 - drug resistance transporter, Bcr/CflA subfamily, at 2,883,896 to 2,885,089
_2732
HP15_2733: HP15_2733 - protein containing sulphatase-modifying factor domain, at 2,885,290 to 2,887,350
_2733
Position (kb)
2883
2884
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2882.961 kb on + strand, within HP15_2731 at 2882.969 kb on - strand, within HP15_2731 at 2883.002 kb on + strand, within HP15_2731 at 2883.103 kb on + strand, within HP15_2731 at 2883.153 kb on + strand, within HP15_2731 at 2883.219 kb on + strand, within HP15_2731 at 2883.227 kb on - strand, within HP15_2731 at 2883.232 kb on - strand, within HP15_2731 at 2883.245 kb on + strand, within HP15_2731 at 2883.253 kb on - strand, within HP15_2731 at 2883.277 kb on - strand, within HP15_2731 at 2883.279 kb on + strand, within HP15_2731 at 2883.287 kb on - strand, within HP15_2731 at 2883.443 kb on - strand, within HP15_2731 at 2883.479 kb on - strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.520 kb on + strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.606 kb on + strand at 2883.696 kb on + strand at 2883.704 kb on - strand at 2883.753 kb on + strand at 2883.760 kb on + strand at 2883.784 kb on + strand at 2883.896 kb on - strand at 2883.933 kb on - strand at 2883.933 kb on - strand at 2884.058 kb on - strand, within HP15_2732 at 2884.104 kb on + strand, within HP15_2732 at 2884.162 kb on + strand, within HP15_2732 at 2884.212 kb on - strand, within HP15_2732 at 2884.229 kb on + strand, within HP15_2732 at 2884.272 kb on + strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.437 kb on + strand, within HP15_2732 at 2884.573 kb on + strand, within HP15_2732 at 2884.671 kb on + strand, within HP15_2732 at 2884.783 kb on + strand, within HP15_2732 at 2884.791 kb on - strand, within HP15_2732 at 2884.844 kb on - strand, within HP15_2732 at 2884.899 kb on + strand, within HP15_2732 at 2884.985 kb on + strand at 2884.988 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2885.155 kb on + strand at 2885.267 kb on - strand at 2885.525 kb on + strand, within HP15_2733 at 2885.611 kb on - strand, within HP15_2733 at 2885.611 kb on - strand, within HP15_2733 at 2885.615 kb on + strand, within HP15_2733 at 2885.740 kb on - strand, within HP15_2733 at 2885.835 kb on - strand, within HP15_2733 at 2885.859 kb on + strand, within HP15_2733 at 2885.931 kb on + strand, within HP15_2733 at 2885.931 kb on + strand, within HP15_2733 at 2885.931 kb on + strand, within HP15_2733 at 2885.939 kb on - strand, within HP15_2733 at 2885.939 kb on - strand, within HP15_2733 at 2885.939 kb on - strand, within HP15_2733 at 2885.985 kb on + strand, within HP15_2733 at 2885.985 kb on + strand, within HP15_2733 at 2886.017 kb on - strand, within HP15_2733 at 2886.019 kb on + strand, within HP15_2733
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 2,882,961 + HP15_2731 0.51 +0.1 2,882,969 - HP15_2731 0.52 +0.3 2,883,002 + HP15_2731 0.54 +3.1 2,883,103 + HP15_2731 0.61 -0.6 2,883,153 + HP15_2731 0.64 +2.0 2,883,219 + HP15_2731 0.69 -0.6 2,883,227 - HP15_2731 0.69 -1.2 2,883,232 - HP15_2731 0.69 +2.5 2,883,245 + HP15_2731 0.70 +2.2 2,883,253 - HP15_2731 0.71 +2.4 2,883,277 - HP15_2731 0.72 +1.5 2,883,279 + HP15_2731 0.73 -0.6 2,883,287 - HP15_2731 0.73 +1.2 2,883,443 - HP15_2731 0.84 -0.7 2,883,479 - HP15_2731 0.86 +1.0 2,883,515 + HP15_2731 0.88 -1.4 2,883,515 + HP15_2731 0.88 +0.1 2,883,515 + HP15_2731 0.88 -0.2 2,883,515 + HP15_2731 0.88 +2.0 2,883,515 + HP15_2731 0.88 -0.2 2,883,520 + HP15_2731 0.89 +2.0 2,883,523 - HP15_2731 0.89 +2.5 2,883,523 - HP15_2731 0.89 -0.5 2,883,523 - HP15_2731 0.89 +0.6 2,883,523 - HP15_2731 0.89 +1.8 2,883,523 - HP15_2731 0.89 +1.7 2,883,606 + +1.2 2,883,696 + -0.0 2,883,704 - +1.3 2,883,753 + +2.9 2,883,760 + +2.4 2,883,784 + +0.3 2,883,896 - -0.0 2,883,933 - -1.2 2,883,933 - -1.8 2,884,058 - HP15_2732 0.14 -0.3 2,884,104 + HP15_2732 0.17 -0.6 2,884,162 + HP15_2732 0.22 +0.0 2,884,212 - HP15_2732 0.26 -0.4 2,884,229 + HP15_2732 0.28 +0.9 2,884,272 + HP15_2732 0.31 +1.8 2,884,368 - HP15_2732 0.40 -2.4 2,884,368 - HP15_2732 0.40 -0.4 2,884,368 - HP15_2732 0.40 +2.2 2,884,437 + HP15_2732 0.45 -1.2 2,884,573 + HP15_2732 0.57 +1.3 2,884,671 + HP15_2732 0.65 +1.7 2,884,783 + HP15_2732 0.74 -0.5 2,884,791 - HP15_2732 0.75 -1.3 2,884,844 - HP15_2732 0.79 -0.8 2,884,899 + HP15_2732 0.84 -1.4 2,884,985 + -0.5 2,884,988 - +3.2 2,884,993 - +2.9 2,884,993 - +0.1 2,884,993 - +2.0 2,884,993 - +2.4 2,884,993 - -2.2 2,884,993 - +0.3 2,885,155 + +2.4 2,885,267 - -0.8 2,885,525 + HP15_2733 0.11 +0.3 2,885,611 - HP15_2733 0.16 -0.9 2,885,611 - HP15_2733 0.16 +2.1 2,885,615 + HP15_2733 0.16 -1.5 2,885,740 - HP15_2733 0.22 +2.0 2,885,835 - HP15_2733 0.26 -0.1 2,885,859 + HP15_2733 0.28 -0.3 2,885,931 + HP15_2733 0.31 +2.5 2,885,931 + HP15_2733 0.31 +1.8 2,885,931 + HP15_2733 0.31 +1.9 2,885,939 - HP15_2733 0.31 -1.0 2,885,939 - HP15_2733 0.31 +0.8 2,885,939 - HP15_2733 0.31 -0.4 2,885,985 + HP15_2733 0.34 -0.1 2,885,985 + HP15_2733 0.34 +1.9 2,886,017 - HP15_2733 0.35 -0.8 2,886,019 + HP15_2733 0.35 +1.9
Or see this region's nucleotide sequence