Strain Fitness in Marinobacter adhaerens HP15 around HP15_2693

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2692 and HP15_2693 are separated by 3 nucleotidesHP15_2693 and HP15_2694 overlap by 4 nucleotidesHP15_2694 and HP15_2695 overlap by 4 nucleotides HP15_2692: HP15_2692 - phenylacetate degradation probable enoyl-CoA hydratase paaB, at 2,844,322 to 2,845,113 _2692 HP15_2693: HP15_2693 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-) (from data), at 2,845,117 to 2,846,637 _2693 HP15_2694: HP15_2694 - phenylacetic acid degradation protein PaaD, at 2,846,634 to 2,847,080 _2694 HP15_2695: HP15_2695 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data), at 2,847,077 to 2,848,324 _2695 Position (kb) 2845 2846 2847Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2844.152 kb on + strandat 2844.305 kb on + strandat 2844.357 kb on + strandat 2844.365 kb on - strandat 2844.365 kb on - strandat 2844.373 kb on + strandat 2844.374 kb on + strandat 2844.446 kb on - strand, within HP15_2692at 2844.464 kb on - strand, within HP15_2692at 2844.524 kb on - strand, within HP15_2692at 2844.599 kb on + strand, within HP15_2692at 2844.626 kb on - strand, within HP15_2692at 2844.679 kb on - strand, within HP15_2692at 2844.684 kb on - strand, within HP15_2692at 2844.801 kb on + strand, within HP15_2692at 2844.809 kb on - strand, within HP15_2692at 2844.809 kb on - strand, within HP15_2692at 2844.809 kb on - strand, within HP15_2692at 2844.810 kb on - strand, within HP15_2692at 2844.834 kb on - strand, within HP15_2692at 2844.839 kb on - strand, within HP15_2692at 2845.230 kb on + strandat 2845.238 kb on - strandat 2845.413 kb on + strand, within HP15_2693at 2845.421 kb on - strand, within HP15_2693at 2845.436 kb on + strand, within HP15_2693at 2845.449 kb on + strand, within HP15_2693at 2845.449 kb on + strand, within HP15_2693at 2845.454 kb on - strand, within HP15_2693at 2845.457 kb on - strand, within HP15_2693at 2845.613 kb on - strand, within HP15_2693at 2845.693 kb on - strand, within HP15_2693at 2845.746 kb on - strand, within HP15_2693at 2845.792 kb on + strand, within HP15_2693at 2845.863 kb on - strand, within HP15_2693at 2845.882 kb on + strand, within HP15_2693at 2845.973 kb on - strand, within HP15_2693at 2846.001 kb on + strand, within HP15_2693at 2846.009 kb on - strand, within HP15_2693at 2846.032 kb on - strand, within HP15_2693at 2846.057 kb on + strand, within HP15_2693at 2846.088 kb on + strand, within HP15_2693at 2846.134 kb on - strand, within HP15_2693at 2846.425 kb on + strand, within HP15_2693at 2846.481 kb on - strand, within HP15_2693at 2846.481 kb on - strand, within HP15_2693at 2846.483 kb on + strand, within HP15_2693at 2846.494 kb on + strandat 2846.582 kb on + strandat 2846.678 kb on + strandat 2846.712 kb on + strand, within HP15_2694at 2846.741 kb on + strand, within HP15_2694at 2846.741 kb on + strand, within HP15_2694at 2846.805 kb on + strand, within HP15_2694at 2846.814 kb on - strand, within HP15_2694at 2846.890 kb on + strand, within HP15_2694at 2846.988 kb on - strand, within HP15_2694at 2847.010 kb on + strand, within HP15_2694at 2847.018 kb on - strand, within HP15_2694at 2847.028 kb on - strand, within HP15_2694at 2847.034 kb on + strand, within HP15_2694at 2847.140 kb on - strandat 2847.154 kb on + strandat 2847.221 kb on + strand, within HP15_2695at 2847.229 kb on - strand, within HP15_2695at 2847.259 kb on - strand, within HP15_2695at 2847.269 kb on - strand, within HP15_2695at 2847.422 kb on + strand, within HP15_2695at 2847.457 kb on - strand, within HP15_2695

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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2,844,152 + +0.1
2,844,305 + +1.8
2,844,357 + +0.6
2,844,365 - +2.9
2,844,365 - +0.1
2,844,373 + +1.2
2,844,374 + -0.0
2,844,446 - HP15_2692 0.16 -1.0
2,844,464 - HP15_2692 0.18 -0.6
2,844,524 - HP15_2692 0.26 -1.5
2,844,599 + HP15_2692 0.35 +2.0
2,844,626 - HP15_2692 0.38 -0.9
2,844,679 - HP15_2692 0.45 +2.0
2,844,684 - HP15_2692 0.46 +2.4
2,844,801 + HP15_2692 0.60 -0.8
2,844,809 - HP15_2692 0.61 +0.5
2,844,809 - HP15_2692 0.61 +2.5
2,844,809 - HP15_2692 0.61 +1.4
2,844,810 - HP15_2692 0.62 +0.9
2,844,834 - HP15_2692 0.65 -0.4
2,844,839 - HP15_2692 0.65 +1.4
2,845,230 + +0.0
2,845,238 - -0.7
2,845,413 + HP15_2693 0.19 +2.0
2,845,421 - HP15_2693 0.20 +1.4
2,845,436 + HP15_2693 0.21 -0.8
2,845,449 + HP15_2693 0.22 -0.3
2,845,449 + HP15_2693 0.22 -0.1
2,845,454 - HP15_2693 0.22 +2.4
2,845,457 - HP15_2693 0.22 -1.7
2,845,613 - HP15_2693 0.33 +2.1
2,845,693 - HP15_2693 0.38 -1.7
2,845,746 - HP15_2693 0.41 +2.3
2,845,792 + HP15_2693 0.44 -0.6
2,845,863 - HP15_2693 0.49 -0.1
2,845,882 + HP15_2693 0.50 +1.3
2,845,973 - HP15_2693 0.56 +2.9
2,846,001 + HP15_2693 0.58 +2.1
2,846,009 - HP15_2693 0.59 -0.8
2,846,032 - HP15_2693 0.60 +0.6
2,846,057 + HP15_2693 0.62 +2.0
2,846,088 + HP15_2693 0.64 -0.5
2,846,134 - HP15_2693 0.67 +2.4
2,846,425 + HP15_2693 0.86 +0.2
2,846,481 - HP15_2693 0.90 -0.4
2,846,481 - HP15_2693 0.90 +1.9
2,846,483 + HP15_2693 0.90 -0.6
2,846,494 + +0.8
2,846,582 + +2.0
2,846,678 + +2.0
2,846,712 + HP15_2694 0.17 -0.9
2,846,741 + HP15_2694 0.24 +0.4
2,846,741 + HP15_2694 0.24 +0.1
2,846,805 + HP15_2694 0.38 +0.0
2,846,814 - HP15_2694 0.40 -0.2
2,846,890 + HP15_2694 0.57 -1.5
2,846,988 - HP15_2694 0.79 -0.1
2,847,010 + HP15_2694 0.84 -1.0
2,847,018 - HP15_2694 0.86 -1.0
2,847,028 - HP15_2694 0.88 +1.9
2,847,034 + HP15_2694 0.89 -1.7
2,847,140 - +0.6
2,847,154 + +1.7
2,847,221 + HP15_2695 0.12 +2.2
2,847,229 - HP15_2695 0.12 -0.2
2,847,259 - HP15_2695 0.15 +1.5
2,847,269 - HP15_2695 0.15 -0.9
2,847,422 + HP15_2695 0.28 -2.3
2,847,457 - HP15_2695 0.30 -0.4

Or see this region's nucleotide sequence