Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2677 and HP15_2678 are separated by 78 nucleotides HP15_2678 and HP15_2679 are separated by 179 nucleotides HP15_2679 and HP15_2680 are separated by 23 nucleotides
HP15_2677: HP15_2677 - conserved hypothetical protein, secreted, at 2,826,277 to 2,826,753
_2677
HP15_2678: HP15_2678 - shikimate kinase, at 2,826,832 to 2,827,356
_2678
HP15_2679: HP15_2679 - transglycosylase SLT domain protein, at 2,827,536 to 2,828,237
_2679
HP15_2680: HP15_2680 - protein containing LysR, substrate-binding / Bacterial regulatory protein, LysR, at 2,828,261 to 2,829,193
_2680
Position (kb)
2827
2828
2829 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2826.610 kb on - strand, within HP15_2677 at 2826.638 kb on - strand, within HP15_2677 at 2826.688 kb on - strand, within HP15_2677 at 2826.690 kb on + strand, within HP15_2677 at 2826.864 kb on - strand at 2827.034 kb on - strand, within HP15_2678 at 2827.064 kb on + strand, within HP15_2678 at 2827.082 kb on - strand, within HP15_2678 at 2827.090 kb on + strand, within HP15_2678 at 2827.191 kb on + strand, within HP15_2678 at 2827.470 kb on - strand at 2827.544 kb on + strand at 2827.554 kb on + strand at 2827.677 kb on - strand, within HP15_2679 at 2827.748 kb on - strand, within HP15_2679 at 2827.750 kb on + strand, within HP15_2679 at 2827.780 kb on - strand, within HP15_2679 at 2827.784 kb on - strand, within HP15_2679 at 2827.839 kb on + strand, within HP15_2679 at 2827.889 kb on + strand, within HP15_2679 at 2827.889 kb on + strand, within HP15_2679 at 2827.889 kb on - strand, within HP15_2679 at 2827.908 kb on - strand, within HP15_2679 at 2827.962 kb on + strand, within HP15_2679 at 2828.098 kb on - strand, within HP15_2679 at 2828.098 kb on - strand, within HP15_2679 at 2828.176 kb on - strand at 2828.372 kb on - strand, within HP15_2680 at 2828.434 kb on - strand, within HP15_2680 at 2828.449 kb on - strand, within HP15_2680 at 2828.455 kb on + strand, within HP15_2680 at 2828.463 kb on - strand, within HP15_2680 at 2828.515 kb on - strand, within HP15_2680 at 2828.517 kb on - strand, within HP15_2680 at 2828.524 kb on - strand, within HP15_2680 at 2828.566 kb on + strand, within HP15_2680 at 2828.689 kb on - strand, within HP15_2680 at 2828.972 kb on + strand, within HP15_2680 at 2829.022 kb on + strand, within HP15_2680 at 2829.067 kb on + strand, within HP15_2680 at 2829.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 2,826,610 - HP15_2677 0.70 -2.6 2,826,638 - HP15_2677 0.76 -0.5 2,826,688 - HP15_2677 0.86 +0.2 2,826,690 + HP15_2677 0.87 -0.6 2,826,864 - -0.3 2,827,034 - HP15_2678 0.38 +2.7 2,827,064 + HP15_2678 0.44 -0.2 2,827,082 - HP15_2678 0.48 +0.0 2,827,090 + HP15_2678 0.49 -0.6 2,827,191 + HP15_2678 0.68 +0.6 2,827,470 - +2.0 2,827,544 + +2.3 2,827,554 + +2.2 2,827,677 - HP15_2679 0.20 -0.3 2,827,748 - HP15_2679 0.30 -0.6 2,827,750 + HP15_2679 0.30 +0.4 2,827,780 - HP15_2679 0.35 +0.5 2,827,784 - HP15_2679 0.35 +0.3 2,827,839 + HP15_2679 0.43 -0.3 2,827,889 + HP15_2679 0.50 +1.8 2,827,889 + HP15_2679 0.50 -0.7 2,827,889 - HP15_2679 0.50 -0.5 2,827,908 - HP15_2679 0.53 -0.9 2,827,962 + HP15_2679 0.61 +2.5 2,828,098 - HP15_2679 0.80 +0.4 2,828,098 - HP15_2679 0.80 +2.3 2,828,176 - -0.0 2,828,372 - HP15_2680 0.12 -0.9 2,828,434 - HP15_2680 0.19 -2.5 2,828,449 - HP15_2680 0.20 +1.9 2,828,455 + HP15_2680 0.21 -0.5 2,828,463 - HP15_2680 0.22 -0.3 2,828,515 - HP15_2680 0.27 +2.3 2,828,517 - HP15_2680 0.27 +0.1 2,828,524 - HP15_2680 0.28 +2.7 2,828,566 + HP15_2680 0.33 -1.6 2,828,689 - HP15_2680 0.46 +0.5 2,828,972 + HP15_2680 0.76 +0.6 2,829,022 + HP15_2680 0.82 +0.3 2,829,067 + HP15_2680 0.86 +0.8 2,829,111 + +1.6
Or see this region's nucleotide sequence