Strain Fitness in Marinobacter adhaerens HP15 around HP15_2670

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2668 and HP15_2669 are separated by 58 nucleotidesHP15_2669 and HP15_2670 are separated by 26 nucleotidesHP15_2670 and HP15_2671 are separated by 26 nucleotides HP15_2668: HP15_2668 - diacylglycerol kinase, catalytic region, at 2,817,022 to 2,817,930 _2668 HP15_2669: HP15_2669 - alpha/beta hydrolase fold protein, at 2,817,989 to 2,818,900 _2669 HP15_2670: HP15_2670 - RarD protein, DMT superfamily transporter, at 2,818,927 to 2,819,817 _2670 HP15_2671: HP15_2671 - permease of the drug/metabolite transporter (DMT) superfamily-like protein, at 2,819,844 to 2,820,731 _2671 Position (kb) 2818 2819 2820Strain fitness (log2 ratio) -1 0 1 2 3at 2817.947 kb on + strandat 2818.048 kb on + strandat 2818.085 kb on - strand, within HP15_2669at 2818.093 kb on - strand, within HP15_2669at 2818.105 kb on - strand, within HP15_2669at 2818.111 kb on - strand, within HP15_2669at 2818.171 kb on - strand, within HP15_2669at 2818.270 kb on - strand, within HP15_2669at 2818.289 kb on - strand, within HP15_2669at 2818.501 kb on + strand, within HP15_2669at 2818.509 kb on - strand, within HP15_2669at 2818.514 kb on - strand, within HP15_2669at 2818.514 kb on - strand, within HP15_2669at 2818.563 kb on - strand, within HP15_2669at 2818.626 kb on + strand, within HP15_2669at 2818.637 kb on - strand, within HP15_2669at 2818.686 kb on + strand, within HP15_2669at 2818.764 kb on - strand, within HP15_2669at 2818.809 kb on + strandat 2818.824 kb on - strandat 2818.850 kb on + strandat 2818.867 kb on + strandat 2818.897 kb on - strandat 2818.902 kb on - strandat 2818.902 kb on - strandat 2818.904 kb on + strandat 2818.904 kb on + strandat 2818.912 kb on - strandat 2818.912 kb on - strandat 2818.978 kb on + strandat 2818.989 kb on + strandat 2819.063 kb on - strand, within HP15_2670at 2819.238 kb on + strand, within HP15_2670at 2819.276 kb on - strand, within HP15_2670at 2819.357 kb on - strand, within HP15_2670at 2819.488 kb on + strand, within HP15_2670at 2819.573 kb on + strand, within HP15_2670at 2819.578 kb on + strand, within HP15_2670at 2819.590 kb on + strand, within HP15_2670at 2819.590 kb on + strand, within HP15_2670at 2819.600 kb on + strand, within HP15_2670at 2819.668 kb on - strand, within HP15_2670at 2819.668 kb on - strand, within HP15_2670at 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.737 kb on - strandat 2819.737 kb on - strandat 2819.792 kb on - strandat 2819.806 kb on - strandat 2819.917 kb on + strandat 2819.974 kb on + strand, within HP15_2671at 2819.974 kb on + strand, within HP15_2671at 2819.982 kb on - strand, within HP15_2671at 2820.081 kb on - strand, within HP15_2671at 2820.096 kb on + strand, within HP15_2671at 2820.096 kb on + strand, within HP15_2671at 2820.104 kb on - strand, within HP15_2671at 2820.104 kb on - strand, within HP15_2671at 2820.160 kb on + strand, within HP15_2671at 2820.180 kb on + strand, within HP15_2671at 2820.344 kb on + strand, within HP15_2671at 2820.352 kb on - strand, within HP15_2671at 2820.461 kb on - strand, within HP15_2671at 2820.489 kb on - strand, within HP15_2671at 2820.498 kb on + strand, within HP15_2671at 2820.538 kb on - strand, within HP15_2671at 2820.568 kb on + strand, within HP15_2671at 2820.576 kb on - strand, within HP15_2671at 2820.580 kb on + strand, within HP15_2671at 2820.580 kb on + strand, within HP15_2671at 2820.642 kb on + strand, within HP15_2671at 2820.650 kb on - strandat 2820.650 kb on - strandat 2820.650 kb on - strandat 2820.650 kb on - strandat 2820.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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2,817,947 + -0.2
2,818,048 + +1.8
2,818,085 - HP15_2669 0.11 -0.6
2,818,093 - HP15_2669 0.11 -0.8
2,818,105 - HP15_2669 0.13 +1.8
2,818,111 - HP15_2669 0.13 +2.0
2,818,171 - HP15_2669 0.20 -0.9
2,818,270 - HP15_2669 0.31 +1.6
2,818,289 - HP15_2669 0.33 -0.9
2,818,501 + HP15_2669 0.56 +1.6
2,818,509 - HP15_2669 0.57 +3.0
2,818,514 - HP15_2669 0.58 -0.2
2,818,514 - HP15_2669 0.58 +0.5
2,818,563 - HP15_2669 0.63 -1.2
2,818,626 + HP15_2669 0.70 +0.3
2,818,637 - HP15_2669 0.71 +1.7
2,818,686 + HP15_2669 0.76 +1.9
2,818,764 - HP15_2669 0.85 +2.1
2,818,809 + -1.3
2,818,824 - +2.2
2,818,850 + +2.0
2,818,867 + +2.1
2,818,897 - +0.1
2,818,902 - -1.6
2,818,902 - -1.0
2,818,904 + +0.3
2,818,904 + +0.5
2,818,912 - +1.3
2,818,912 - +2.4
2,818,978 + -1.2
2,818,989 + +1.7
2,819,063 - HP15_2670 0.15 -0.7
2,819,238 + HP15_2670 0.35 +2.3
2,819,276 - HP15_2670 0.39 -0.5
2,819,357 - HP15_2670 0.48 -1.5
2,819,488 + HP15_2670 0.63 -0.4
2,819,573 + HP15_2670 0.73 +0.0
2,819,578 + HP15_2670 0.73 -0.4
2,819,590 + HP15_2670 0.74 -0.2
2,819,590 + HP15_2670 0.74 -1.0
2,819,600 + HP15_2670 0.76 +2.2
2,819,668 - HP15_2670 0.83 +0.8
2,819,668 - HP15_2670 0.83 +2.3
2,819,729 + +2.0
2,819,729 + +0.9
2,819,729 + +0.4
2,819,729 + -0.2
2,819,729 + +0.9
2,819,729 + -0.6
2,819,737 - -1.7
2,819,737 - -0.4
2,819,792 - +0.6
2,819,806 - +1.0
2,819,917 + +2.8
2,819,974 + HP15_2671 0.15 -0.4
2,819,974 + HP15_2671 0.15 -0.2
2,819,982 - HP15_2671 0.16 -0.3
2,820,081 - HP15_2671 0.27 +2.9
2,820,096 + HP15_2671 0.28 -1.0
2,820,096 + HP15_2671 0.28 +1.5
2,820,104 - HP15_2671 0.29 +0.2
2,820,104 - HP15_2671 0.29 +0.3
2,820,160 + HP15_2671 0.36 -0.4
2,820,180 + HP15_2671 0.38 +0.8
2,820,344 + HP15_2671 0.56 +0.0
2,820,352 - HP15_2671 0.57 +2.6
2,820,461 - HP15_2671 0.69 -0.5
2,820,489 - HP15_2671 0.73 -0.4
2,820,498 + HP15_2671 0.74 +2.0
2,820,538 - HP15_2671 0.78 +0.1
2,820,568 + HP15_2671 0.82 +2.5
2,820,576 - HP15_2671 0.82 -0.4
2,820,580 + HP15_2671 0.83 +1.5
2,820,580 + HP15_2671 0.83 +1.7
2,820,642 + HP15_2671 0.90 -0.1
2,820,650 - -1.4
2,820,650 - -0.4
2,820,650 - +1.9
2,820,650 - +2.4
2,820,676 - -0.4

Or see this region's nucleotide sequence