Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2668 and HP15_2669 are separated by 58 nucleotides HP15_2669 and HP15_2670 are separated by 26 nucleotides HP15_2670 and HP15_2671 are separated by 26 nucleotides
HP15_2668: HP15_2668 - diacylglycerol kinase, catalytic region, at 2,817,022 to 2,817,930
_2668
HP15_2669: HP15_2669 - alpha/beta hydrolase fold protein, at 2,817,989 to 2,818,900
_2669
HP15_2670: HP15_2670 - RarD protein, DMT superfamily transporter, at 2,818,927 to 2,819,817
_2670
HP15_2671: HP15_2671 - permease of the drug/metabolite transporter (DMT) superfamily-like protein, at 2,819,844 to 2,820,731
_2671
Position (kb)
2818
2819
2820 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2817.947 kb on + strand at 2818.048 kb on + strand at 2818.085 kb on - strand, within HP15_2669 at 2818.093 kb on - strand, within HP15_2669 at 2818.105 kb on - strand, within HP15_2669 at 2818.111 kb on - strand, within HP15_2669 at 2818.171 kb on - strand, within HP15_2669 at 2818.270 kb on - strand, within HP15_2669 at 2818.289 kb on - strand, within HP15_2669 at 2818.501 kb on + strand, within HP15_2669 at 2818.509 kb on - strand, within HP15_2669 at 2818.514 kb on - strand, within HP15_2669 at 2818.514 kb on - strand, within HP15_2669 at 2818.563 kb on - strand, within HP15_2669 at 2818.626 kb on + strand, within HP15_2669 at 2818.637 kb on - strand, within HP15_2669 at 2818.686 kb on + strand, within HP15_2669 at 2818.764 kb on - strand, within HP15_2669 at 2818.809 kb on + strand at 2818.824 kb on - strand at 2818.850 kb on + strand at 2818.867 kb on + strand at 2818.897 kb on - strand at 2818.902 kb on - strand at 2818.902 kb on - strand at 2818.904 kb on + strand at 2818.904 kb on + strand at 2818.912 kb on - strand at 2818.912 kb on - strand at 2818.978 kb on + strand at 2818.989 kb on + strand at 2819.063 kb on - strand, within HP15_2670 at 2819.238 kb on + strand, within HP15_2670 at 2819.276 kb on - strand, within HP15_2670 at 2819.357 kb on - strand, within HP15_2670 at 2819.488 kb on + strand, within HP15_2670 at 2819.573 kb on + strand, within HP15_2670 at 2819.578 kb on + strand, within HP15_2670 at 2819.590 kb on + strand, within HP15_2670 at 2819.590 kb on + strand, within HP15_2670 at 2819.600 kb on + strand, within HP15_2670 at 2819.668 kb on - strand, within HP15_2670 at 2819.668 kb on - strand, within HP15_2670 at 2819.729 kb on + strand at 2819.729 kb on + strand at 2819.729 kb on + strand at 2819.729 kb on + strand at 2819.729 kb on + strand at 2819.729 kb on + strand at 2819.737 kb on - strand at 2819.737 kb on - strand at 2819.792 kb on - strand at 2819.806 kb on - strand at 2819.917 kb on + strand at 2819.974 kb on + strand, within HP15_2671 at 2819.974 kb on + strand, within HP15_2671 at 2819.982 kb on - strand, within HP15_2671 at 2820.081 kb on - strand, within HP15_2671 at 2820.096 kb on + strand, within HP15_2671 at 2820.096 kb on + strand, within HP15_2671 at 2820.104 kb on - strand, within HP15_2671 at 2820.104 kb on - strand, within HP15_2671 at 2820.160 kb on + strand, within HP15_2671 at 2820.180 kb on + strand, within HP15_2671 at 2820.344 kb on + strand, within HP15_2671 at 2820.352 kb on - strand, within HP15_2671 at 2820.461 kb on - strand, within HP15_2671 at 2820.489 kb on - strand, within HP15_2671 at 2820.498 kb on + strand, within HP15_2671 at 2820.538 kb on - strand, within HP15_2671 at 2820.568 kb on + strand, within HP15_2671 at 2820.576 kb on - strand, within HP15_2671 at 2820.580 kb on + strand, within HP15_2671 at 2820.580 kb on + strand, within HP15_2671 at 2820.642 kb on + strand, within HP15_2671 at 2820.650 kb on - strand at 2820.650 kb on - strand at 2820.650 kb on - strand at 2820.650 kb on - strand at 2820.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 2,817,947 + -0.2 2,818,048 + +1.8 2,818,085 - HP15_2669 0.11 -0.6 2,818,093 - HP15_2669 0.11 -0.8 2,818,105 - HP15_2669 0.13 +1.8 2,818,111 - HP15_2669 0.13 +2.0 2,818,171 - HP15_2669 0.20 -0.9 2,818,270 - HP15_2669 0.31 +1.6 2,818,289 - HP15_2669 0.33 -0.9 2,818,501 + HP15_2669 0.56 +1.6 2,818,509 - HP15_2669 0.57 +3.0 2,818,514 - HP15_2669 0.58 -0.2 2,818,514 - HP15_2669 0.58 +0.5 2,818,563 - HP15_2669 0.63 -1.2 2,818,626 + HP15_2669 0.70 +0.3 2,818,637 - HP15_2669 0.71 +1.7 2,818,686 + HP15_2669 0.76 +1.9 2,818,764 - HP15_2669 0.85 +2.1 2,818,809 + -1.3 2,818,824 - +2.2 2,818,850 + +2.0 2,818,867 + +2.1 2,818,897 - +0.1 2,818,902 - -1.6 2,818,902 - -1.0 2,818,904 + +0.3 2,818,904 + +0.5 2,818,912 - +1.3 2,818,912 - +2.4 2,818,978 + -1.2 2,818,989 + +1.7 2,819,063 - HP15_2670 0.15 -0.7 2,819,238 + HP15_2670 0.35 +2.3 2,819,276 - HP15_2670 0.39 -0.5 2,819,357 - HP15_2670 0.48 -1.5 2,819,488 + HP15_2670 0.63 -0.4 2,819,573 + HP15_2670 0.73 +0.0 2,819,578 + HP15_2670 0.73 -0.4 2,819,590 + HP15_2670 0.74 -0.2 2,819,590 + HP15_2670 0.74 -1.0 2,819,600 + HP15_2670 0.76 +2.2 2,819,668 - HP15_2670 0.83 +0.8 2,819,668 - HP15_2670 0.83 +2.3 2,819,729 + +2.0 2,819,729 + +0.9 2,819,729 + +0.4 2,819,729 + -0.2 2,819,729 + +0.9 2,819,729 + -0.6 2,819,737 - -1.7 2,819,737 - -0.4 2,819,792 - +0.6 2,819,806 - +1.0 2,819,917 + +2.8 2,819,974 + HP15_2671 0.15 -0.4 2,819,974 + HP15_2671 0.15 -0.2 2,819,982 - HP15_2671 0.16 -0.3 2,820,081 - HP15_2671 0.27 +2.9 2,820,096 + HP15_2671 0.28 -1.0 2,820,096 + HP15_2671 0.28 +1.5 2,820,104 - HP15_2671 0.29 +0.2 2,820,104 - HP15_2671 0.29 +0.3 2,820,160 + HP15_2671 0.36 -0.4 2,820,180 + HP15_2671 0.38 +0.8 2,820,344 + HP15_2671 0.56 +0.0 2,820,352 - HP15_2671 0.57 +2.6 2,820,461 - HP15_2671 0.69 -0.5 2,820,489 - HP15_2671 0.73 -0.4 2,820,498 + HP15_2671 0.74 +2.0 2,820,538 - HP15_2671 0.78 +0.1 2,820,568 + HP15_2671 0.82 +2.5 2,820,576 - HP15_2671 0.82 -0.4 2,820,580 + HP15_2671 0.83 +1.5 2,820,580 + HP15_2671 0.83 +1.7 2,820,642 + HP15_2671 0.90 -0.1 2,820,650 - -1.4 2,820,650 - -0.4 2,820,650 - +1.9 2,820,650 - +2.4 2,820,676 - -0.4
Or see this region's nucleotide sequence