Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2348 and HP15_2349 are separated by 260 nucleotides HP15_2349 and HP15_2350 are separated by 17 nucleotides HP15_2350 and HP15_2351 are separated by 71 nucleotides HP15_2351 and HP15_2352 are separated by 284 nucleotides
HP15_2348: HP15_2348 - conserved hypothetical protein, at 2,471,648 to 2,472,628
_2348
HP15_2349: HP15_2349 - phosphoribosylaminoimidazole carboxylase catalytic subunit, at 2,472,889 to 2,473,416
_2349
HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552
_2350
HP15_2351: HP15_2351 - superoxide dismutase, Fe, at 2,474,624 to 2,475,202
_2351
HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547
_2352
Position (kb)
2473
2474
2475 Strain fitness (log2 ratio)
-1
0
1
2 at 2472.599 kb on - strand at 2472.668 kb on + strand at 2472.749 kb on - strand at 2473.394 kb on + strand at 2474.546 kb on + strand at 2474.554 kb on - strand at 2475.244 kb on - strand at 2475.361 kb on + strand at 2475.427 kb on + strand at 2475.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 2,472,599 - -0.1 2,472,668 + +1.6 2,472,749 - -0.7 2,473,394 + -0.3 2,474,546 + +2.3 2,474,554 - -0.4 2,475,244 - -1.2 2,475,361 + -0.7 2,475,427 + +1.5 2,475,440 - +1.4
Or see this region's nucleotide sequence