Strain Fitness in Marinobacter adhaerens HP15 around HP15_2161

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2158 and HP15_2159 are separated by 117 nucleotidesHP15_2159 and HP15_2160 overlap by 4 nucleotidesHP15_2160 and HP15_2161 are separated by 11 nucleotidesHP15_2161 and HP15_2162 are separated by 7 nucleotidesHP15_2162 and HP15_2163 overlap by 1 nucleotides HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246 _2158 HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471 _2159 HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743 _2160 HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564 _2161 HP15_2162: HP15_2162 - sugar ABC transporter, permease protein, at 2,268,572 to 2,269,438 _2162 HP15_2163: HP15_2163 - sugar ABC transporter, ATP-binding protein, at 2,269,438 to 2,270,538 _2163 Position (kb) 2267 2268 2269Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2266.814 kb on - strand, within HP15_2158at 2266.838 kb on + strand, within HP15_2158at 2267.089 kb on + strandat 2267.097 kb on - strandat 2267.119 kb on + strandat 2267.161 kb on + strandat 2267.210 kb on + strandat 2267.247 kb on + strandat 2267.571 kb on + strand, within HP15_2160at 2267.640 kb on + strand, within HP15_2160at 2267.695 kb on + strand, within HP15_2160at 2267.764 kb on + strandat 2267.801 kb on + strandat 2267.877 kb on + strand, within HP15_2161at 2267.954 kb on + strand, within HP15_2161at 2268.119 kb on + strand, within HP15_2161at 2268.272 kb on + strand, within HP15_2161at 2268.399 kb on - strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.446 kb on - strand, within HP15_2161at 2268.446 kb on - strand, within HP15_2161at 2268.751 kb on + strand, within HP15_2162at 2268.819 kb on + strand, within HP15_2162at 2268.916 kb on + strand, within HP15_2162at 2268.916 kb on + strand, within HP15_2162at 2268.921 kb on + strand, within HP15_2162at 2268.929 kb on - strand, within HP15_2162at 2269.010 kb on + strand, within HP15_2162at 2269.018 kb on - strand, within HP15_2162at 2269.177 kb on - strand, within HP15_2162at 2269.182 kb on + strand, within HP15_2162at 2269.276 kb on + strand, within HP15_2162at 2269.280 kb on + strand, within HP15_2162at 2269.312 kb on - strand, within HP15_2162at 2269.421 kb on + strandat 2269.467 kb on - strandat 2269.516 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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2,266,814 - HP15_2158 0.75 +0.6
2,266,838 + HP15_2158 0.77 -0.5
2,267,089 + -0.2
2,267,097 - -0.5
2,267,119 + +0.0
2,267,161 + -0.1
2,267,210 + -0.8
2,267,247 + -1.6
2,267,571 + HP15_2160 0.37 -1.7
2,267,640 + HP15_2160 0.62 -0.7
2,267,695 + HP15_2160 0.82 -0.5
2,267,764 + +0.1
2,267,801 + -0.6
2,267,877 + HP15_2161 0.15 +1.4
2,267,954 + HP15_2161 0.25 +0.7
2,268,119 + HP15_2161 0.45 -0.7
2,268,272 + HP15_2161 0.64 +2.0
2,268,399 - HP15_2161 0.80 +4.5
2,268,438 + HP15_2161 0.84 +0.4
2,268,438 + HP15_2161 0.84 +0.2
2,268,438 + HP15_2161 0.84 -0.1
2,268,438 + HP15_2161 0.84 +1.5
2,268,446 - HP15_2161 0.85 +0.6
2,268,446 - HP15_2161 0.85 -0.1
2,268,751 + HP15_2162 0.21 -1.7
2,268,819 + HP15_2162 0.28 +1.9
2,268,916 + HP15_2162 0.40 -0.7
2,268,916 + HP15_2162 0.40 +0.8
2,268,921 + HP15_2162 0.40 -0.1
2,268,929 - HP15_2162 0.41 -1.1
2,269,010 + HP15_2162 0.51 -2.7
2,269,018 - HP15_2162 0.51 +1.2
2,269,177 - HP15_2162 0.70 +1.6
2,269,182 + HP15_2162 0.70 +1.6
2,269,276 + HP15_2162 0.81 -0.5
2,269,280 + HP15_2162 0.82 -1.0
2,269,312 - HP15_2162 0.85 -2.7
2,269,421 + +1.9
2,269,467 - -0.5
2,269,516 - -0.7

Or see this region's nucleotide sequence