Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_206 and HP15_207 are separated by 76 nucleotides HP15_207 and HP15_208 are separated by 89 nucleotides HP15_208 and HP15_209 are separated by 9 nucleotides
HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837
_206
HP15_207: HP15_207 - BFD-like (2Fe-2S)-binding region, at 194,914 to 195,120
_207
HP15_208: HP15_208 - bacterioferritin, at 195,210 to 195,686
_208
HP15_209: HP15_209 - phosphomannomutase, at 195,696 to 197,054
_209
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 193.975 kb on + strand, within HP15_206 at 193.975 kb on + strand, within HP15_206 at 194.011 kb on + strand, within HP15_206 at 194.019 kb on - strand, within HP15_206 at 194.019 kb on - strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.021 kb on + strand, within HP15_206 at 194.029 kb on - strand, within HP15_206 at 194.029 kb on - strand, within HP15_206 at 194.029 kb on - strand, within HP15_206 at 194.105 kb on - strand, within HP15_206 at 194.182 kb on - strand, within HP15_206 at 194.203 kb on - strand, within HP15_206 at 194.295 kb on + strand, within HP15_206 at 194.304 kb on - strand, within HP15_206 at 194.304 kb on - strand, within HP15_206 at 194.348 kb on + strand, within HP15_206 at 194.348 kb on + strand, within HP15_206 at 194.356 kb on - strand, within HP15_206 at 194.357 kb on - strand, within HP15_206 at 194.379 kb on - strand, within HP15_206 at 194.522 kb on + strand, within HP15_206 at 194.537 kb on + strand, within HP15_206 at 194.637 kb on - strand, within HP15_206 at 194.792 kb on + strand at 194.823 kb on - strand at 194.922 kb on - strand at 194.936 kb on + strand, within HP15_207 at 195.163 kb on + strand at 195.177 kb on - strand at 195.249 kb on + strand at 195.525 kb on + strand, within HP15_208 at 195.556 kb on + strand, within HP15_208 at 195.702 kb on - strand at 195.762 kb on - strand at 195.829 kb on - strand at 195.868 kb on + strand, within HP15_209 at 195.922 kb on - strand, within HP15_209 at 195.927 kb on - strand, within HP15_209 at 195.929 kb on + strand, within HP15_209 at 195.967 kb on + strand, within HP15_209 at 196.007 kb on - strand, within HP15_209 at 196.024 kb on + strand, within HP15_209 at 196.080 kb on - strand, within HP15_209
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 193,975 + HP15_206 0.35 +3.0 193,975 + HP15_206 0.35 +2.7 194,011 + HP15_206 0.37 +0.5 194,019 - HP15_206 0.38 +0.2 194,019 - HP15_206 0.38 +2.1 194,021 + HP15_206 0.38 -0.6 194,021 + HP15_206 0.38 +0.8 194,021 + HP15_206 0.38 -0.4 194,021 + HP15_206 0.38 +0.0 194,029 - HP15_206 0.39 -2.1 194,029 - HP15_206 0.39 -0.2 194,029 - HP15_206 0.39 +2.5 194,105 - HP15_206 0.45 -0.3 194,182 - HP15_206 0.50 -0.9 194,203 - HP15_206 0.52 +2.2 194,295 + HP15_206 0.59 -0.1 194,304 - HP15_206 0.60 +2.1 194,304 - HP15_206 0.60 -2.5 194,348 + HP15_206 0.63 +0.1 194,348 + HP15_206 0.63 +1.6 194,356 - HP15_206 0.64 -0.2 194,357 - HP15_206 0.64 +1.3 194,379 - HP15_206 0.65 +2.1 194,522 + HP15_206 0.76 +0.4 194,537 + HP15_206 0.77 +1.8 194,637 - HP15_206 0.85 +0.1 194,792 + +0.3 194,823 - +2.4 194,922 - +0.2 194,936 + HP15_207 0.11 +1.4 195,163 + -0.9 195,177 - -0.5 195,249 + -0.4 195,525 + HP15_208 0.66 -0.7 195,556 + HP15_208 0.73 +0.0 195,702 - +0.9 195,762 - -0.0 195,829 - +0.1 195,868 + HP15_209 0.13 +0.1 195,922 - HP15_209 0.17 +0.1 195,927 - HP15_209 0.17 -0.2 195,929 + HP15_209 0.17 -0.5 195,967 + HP15_209 0.20 +0.0 196,007 - HP15_209 0.23 -0.6 196,024 + HP15_209 0.24 -1.5 196,080 - HP15_209 0.28 -1.0
Or see this region's nucleotide sequence