Strain Fitness in Marinobacter adhaerens HP15 around HP15_1845

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1844 and HP15_1845 overlap by 8 nucleotidesHP15_1845 and HP15_1846 overlap by 4 nucleotidesHP15_1846 and HP15_1847 are separated by 76 nucleotides HP15_1844: HP15_1844 - DNA polymerase III, delta prime subunit, at 1,943,144 to 1,944,175 _1844 HP15_1845: HP15_1845 - transglutaminase domain protein, at 1,944,168 to 1,946,243 _1845 HP15_1846: HP15_1846 - protein containing DUF58, at 1,946,240 to 1,947,157 _1846 HP15_1847: HP15_1847 - hypothetical protein, at 1,947,234 to 1,947,374 _1847 Position (kb) 1944 1945 1946 1947Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1944.434 kb on + strand, within HP15_1845at 1944.698 kb on - strand, within HP15_1845at 1944.711 kb on - strand, within HP15_1845at 1944.724 kb on + strand, within HP15_1845at 1944.747 kb on + strand, within HP15_1845at 1944.755 kb on - strand, within HP15_1845at 1944.766 kb on - strand, within HP15_1845at 1944.766 kb on - strand, within HP15_1845at 1944.837 kb on + strand, within HP15_1845at 1944.840 kb on - strand, within HP15_1845at 1945.026 kb on + strand, within HP15_1845at 1945.077 kb on - strand, within HP15_1845at 1945.079 kb on + strand, within HP15_1845at 1945.087 kb on - strand, within HP15_1845at 1945.280 kb on - strand, within HP15_1845at 1945.287 kb on + strand, within HP15_1845at 1945.540 kb on - strand, within HP15_1845at 1945.557 kb on + strand, within HP15_1845at 1945.560 kb on - strand, within HP15_1845at 1945.565 kb on - strand, within HP15_1845at 1945.570 kb on - strand, within HP15_1845at 1945.588 kb on - strand, within HP15_1845at 1945.647 kb on - strand, within HP15_1845at 1945.704 kb on - strand, within HP15_1845at 1945.726 kb on - strand, within HP15_1845at 1945.728 kb on + strand, within HP15_1845at 1945.728 kb on + strand, within HP15_1845at 1945.759 kb on - strand, within HP15_1845at 1945.759 kb on - strand, within HP15_1845at 1945.759 kb on - strand, within HP15_1845at 1945.761 kb on + strand, within HP15_1845at 1945.917 kb on + strand, within HP15_1845at 1945.971 kb on + strand, within HP15_1845at 1945.979 kb on - strand, within HP15_1845at 1945.979 kb on - strand, within HP15_1845at 1946.042 kb on + strandat 1946.042 kb on + strandat 1946.079 kb on + strandat 1946.218 kb on + strandat 1946.246 kb on - strandat 1946.257 kb on - strandat 1946.257 kb on - strandat 1946.262 kb on - strandat 1946.262 kb on - strandat 1946.337 kb on + strand, within HP15_1846at 1946.549 kb on - strand, within HP15_1846at 1946.684 kb on + strand, within HP15_1846at 1946.741 kb on + strand, within HP15_1846at 1946.776 kb on - strand, within HP15_1846at 1946.908 kb on + strand, within HP15_1846at 1946.910 kb on + strand, within HP15_1846at 1946.957 kb on - strand, within HP15_1846at 1947.049 kb on - strand, within HP15_1846

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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1,944,434 + HP15_1845 0.13 -0.7
1,944,698 - HP15_1845 0.26 -0.3
1,944,711 - HP15_1845 0.26 -0.8
1,944,724 + HP15_1845 0.27 -0.6
1,944,747 + HP15_1845 0.28 -0.0
1,944,755 - HP15_1845 0.28 -0.4
1,944,766 - HP15_1845 0.29 -1.0
1,944,766 - HP15_1845 0.29 -0.2
1,944,837 + HP15_1845 0.32 +1.9
1,944,840 - HP15_1845 0.32 +2.7
1,945,026 + HP15_1845 0.41 +0.3
1,945,077 - HP15_1845 0.44 -0.3
1,945,079 + HP15_1845 0.44 -0.8
1,945,087 - HP15_1845 0.44 -1.7
1,945,280 - HP15_1845 0.54 -1.6
1,945,287 + HP15_1845 0.54 -0.5
1,945,540 - HP15_1845 0.66 +1.6
1,945,557 + HP15_1845 0.67 +1.9
1,945,560 - HP15_1845 0.67 -1.1
1,945,565 - HP15_1845 0.67 +1.6
1,945,570 - HP15_1845 0.68 +1.3
1,945,588 - HP15_1845 0.68 +2.1
1,945,647 - HP15_1845 0.71 +1.9
1,945,704 - HP15_1845 0.74 +2.1
1,945,726 - HP15_1845 0.75 +0.2
1,945,728 + HP15_1845 0.75 -1.6
1,945,728 + HP15_1845 0.75 -0.3
1,945,759 - HP15_1845 0.77 -0.2
1,945,759 - HP15_1845 0.77 -1.7
1,945,759 - HP15_1845 0.77 +0.2
1,945,761 + HP15_1845 0.77 +1.2
1,945,917 + HP15_1845 0.84 +2.7
1,945,971 + HP15_1845 0.87 -1.9
1,945,979 - HP15_1845 0.87 -0.6
1,945,979 - HP15_1845 0.87 +0.1
1,946,042 + +1.4
1,946,042 + +2.7
1,946,079 + -1.3
1,946,218 + +1.7
1,946,246 - -0.5
1,946,257 - +1.9
1,946,257 - +0.1
1,946,262 - +2.8
1,946,262 - -0.4
1,946,337 + HP15_1846 0.11 -0.5
1,946,549 - HP15_1846 0.34 -0.5
1,946,684 + HP15_1846 0.48 +0.7
1,946,741 + HP15_1846 0.55 +1.9
1,946,776 - HP15_1846 0.58 -0.6
1,946,908 + HP15_1846 0.73 +2.8
1,946,910 + HP15_1846 0.73 +2.1
1,946,957 - HP15_1846 0.78 +0.2
1,947,049 - HP15_1846 0.88 -0.4

Or see this region's nucleotide sequence