Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1753 and HP15_1754 are separated by 10 nucleotides HP15_1754 and HP15_1755 are separated by 164 nucleotides HP15_1755 and HP15_1756 are separated by 0 nucleotides
HP15_1753: HP15_1753 - conserved hypothetical protein, secreted, at 1,852,369 to 1,852,842
_1753
HP15_1754: HP15_1754 - rRNA (guanine-N1-)-methyltransferase A, predicted, at 1,852,853 to 1,853,638
_1754
HP15_1755: HP15_1755 - electron transfer flavoprotein subunit alpha, at 1,853,803 to 1,854,744
_1755
HP15_1756: HP15_1756 - electron transfer flavoprotein, beta subunit, at 1,854,745 to 1,855,494
_1756
Position (kb)
1853
1854
1855 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1852.815 kb on + strand at 1852.816 kb on + strand at 1852.823 kb on - strand at 1852.824 kb on - strand at 1852.871 kb on + strand at 1852.879 kb on - strand at 1852.907 kb on + strand at 1852.938 kb on - strand, within HP15_1754 at 1852.967 kb on - strand, within HP15_1754 at 1852.993 kb on - strand, within HP15_1754 at 1853.066 kb on + strand, within HP15_1754 at 1853.274 kb on + strand, within HP15_1754 at 1853.579 kb on - strand at 1853.633 kb on + strand at 1853.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 1,852,815 + +1.1 1,852,816 + -1.7 1,852,823 - +0.1 1,852,824 - -0.9 1,852,871 + +2.2 1,852,879 - -0.3 1,852,907 + -0.9 1,852,938 - HP15_1754 0.11 -1.8 1,852,967 - HP15_1754 0.15 -0.1 1,852,993 - HP15_1754 0.18 -1.5 1,853,066 + HP15_1754 0.27 -0.2 1,853,274 + HP15_1754 0.54 -0.9 1,853,579 - -1.6 1,853,633 + +0.5 1,853,641 - +2.3
Or see this region's nucleotide sequence