Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1680 and HP15_1681 are separated by 561 nucleotides HP15_1681 and HP15_1682 are separated by 48 nucleotides HP15_1682 and HP15_1683 are separated by 229 nucleotides HP15_1683 and HP15_1684 are separated by 31 nucleotides
HP15_1680: HP15_1680 - transcriptional regulator, LysR family protein, at 1,767,980 to 1,768,891
_1680
HP15_1681: HP15_1681 - hypothetical protein, at 1,769,453 to 1,769,599
_1681
HP15_1682: HP15_1682 - hypothetical protein, at 1,769,648 to 1,769,761
_1682
HP15_1683: HP15_1683 - integron gene cassette protein, at 1,769,991 to 1,770,353
_1683
HP15_1684: HP15_1684 - conserved hypothetical protein, secreted, at 1,770,385 to 1,770,783
_1684
Position (kb) 1769
1770 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1768.684 kb on - strand, within HP15_1680 at 1768.717 kb on + strand, within HP15_1680 at 1768.796 kb on - strand, within HP15_1680 at 1768.881 kb on + strand at 1768.895 kb on + strand at 1768.928 kb on + strand at 1768.928 kb on + strand at 1768.936 kb on - strand at 1769.061 kb on - strand at 1769.357 kb on + strand at 1769.364 kb on + strand at 1769.372 kb on - strand at 1769.437 kb on + strand at 1769.454 kb on + strand at 1769.490 kb on + strand, within HP15_1681 at 1769.490 kb on + strand, within HP15_1681 at 1769.525 kb on + strand, within HP15_1681 at 1769.526 kb on + strand, within HP15_1681 at 1769.541 kb on + strand, within HP15_1681 at 1769.550 kb on - strand, within HP15_1681 at 1769.592 kb on + strand at 1769.641 kb on - strand at 1769.767 kb on + strand at 1769.804 kb on - strand at 1769.806 kb on - strand at 1769.830 kb on - strand at 1769.869 kb on + strand at 1769.919 kb on + strand at 1769.927 kb on - strand at 1769.927 kb on - strand at 1769.930 kb on - strand at 1770.136 kb on + strand, within HP15_1683 at 1770.138 kb on - strand, within HP15_1683 at 1770.197 kb on + strand, within HP15_1683 at 1770.255 kb on + strand, within HP15_1683 at 1770.308 kb on + strand, within HP15_1683 at 1770.316 kb on - strand, within HP15_1683 at 1770.331 kb on - strand at 1770.331 kb on - strand at 1770.396 kb on - strand at 1770.467 kb on + strand, within HP15_1684 at 1770.467 kb on + strand, within HP15_1684 at 1770.467 kb on + strand, within HP15_1684 at 1770.614 kb on - strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.664 kb on + strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.700 kb on - strand, within HP15_1684
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 1,768,684 - HP15_1680 0.77 -0.7 1,768,717 + HP15_1680 0.81 -0.8 1,768,796 - HP15_1680 0.89 -2.3 1,768,881 + +0.4 1,768,895 + -0.4 1,768,928 + -0.1 1,768,928 + +1.5 1,768,936 - +0.4 1,769,061 - +0.3 1,769,357 + -0.3 1,769,364 + +3.3 1,769,372 - +0.1 1,769,437 + +1.0 1,769,454 + -0.0 1,769,490 + HP15_1681 0.25 -0.6 1,769,490 + HP15_1681 0.25 +1.8 1,769,525 + HP15_1681 0.49 -0.1 1,769,526 + HP15_1681 0.50 -0.0 1,769,541 + HP15_1681 0.60 -2.2 1,769,550 - HP15_1681 0.66 -0.3 1,769,592 + -0.5 1,769,641 - +1.9 1,769,767 + +2.7 1,769,804 - -0.7 1,769,806 - -1.5 1,769,830 - +0.1 1,769,869 + -0.4 1,769,919 + +1.4 1,769,927 - +1.5 1,769,927 - +2.3 1,769,930 - -0.6 1,770,136 + HP15_1683 0.40 +2.3 1,770,138 - HP15_1683 0.40 -1.6 1,770,197 + HP15_1683 0.57 -0.6 1,770,255 + HP15_1683 0.73 -0.6 1,770,308 + HP15_1683 0.87 +0.1 1,770,316 - HP15_1683 0.90 -0.1 1,770,331 - +0.1 1,770,331 - +2.0 1,770,396 - -0.9 1,770,467 + HP15_1684 0.21 +1.8 1,770,467 + HP15_1684 0.21 +0.2 1,770,467 + HP15_1684 0.21 +0.1 1,770,614 - HP15_1684 0.57 -0.6 1,770,662 + HP15_1684 0.69 -0.6 1,770,662 + HP15_1684 0.69 +0.0 1,770,662 + HP15_1684 0.69 -0.5 1,770,664 + HP15_1684 0.70 +2.4 1,770,670 - HP15_1684 0.71 +0.3 1,770,670 - HP15_1684 0.71 +2.1 1,770,670 - HP15_1684 0.71 -0.8 1,770,687 + HP15_1684 0.76 +2.2 1,770,687 + HP15_1684 0.76 -2.2 1,770,700 - HP15_1684 0.79 -0.8
Or see this region's nucleotide sequence