Strain Fitness in Marinobacter adhaerens HP15 around HP15_1608

Experiment: NAG as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1606 and HP15_1607 are separated by 59 nucleotidesHP15_1607 and HP15_1608 are separated by 6 nucleotidesHP15_1608 and HP15_1609 are separated by 2 nucleotides HP15_1606: HP15_1606 - general secretion pathway protein I-like protein, at 1,702,653 to 1,703,027 _1606 HP15_1607: HP15_1607 - general secretion pathway protein J-like protein, at 1,703,087 to 1,703,803 _1607 HP15_1608: HP15_1608 - general secretion pathway protein K-like protein, at 1,703,810 to 1,704,814 _1608 HP15_1609: HP15_1609 - general secretion pathway protein L, at 1,704,817 to 1,706,121 _1609 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -1 0 1 2 3at 1702.883 kb on + strand, within HP15_1606at 1703.335 kb on - strand, within HP15_1607at 1703.374 kb on - strand, within HP15_1607at 1703.394 kb on - strand, within HP15_1607at 1703.649 kb on + strand, within HP15_1607at 1703.690 kb on + strand, within HP15_1607at 1703.762 kb on - strandat 1703.819 kb on + strandat 1704.070 kb on + strand, within HP15_1608at 1704.078 kb on - strand, within HP15_1608at 1704.078 kb on - strand, within HP15_1608at 1704.147 kb on - strand, within HP15_1608at 1704.351 kb on - strand, within HP15_1608at 1704.537 kb on - strand, within HP15_1608at 1704.563 kb on + strand, within HP15_1608at 1704.873 kb on - strandat 1704.995 kb on - strand, within HP15_1609at 1705.007 kb on + strand, within HP15_1609at 1705.007 kb on + strand, within HP15_1609at 1705.015 kb on - strand, within HP15_1609at 1705.094 kb on - strand, within HP15_1609at 1705.408 kb on - strand, within HP15_1609at 1705.504 kb on - strand, within HP15_1609at 1705.638 kb on + strand, within HP15_1609

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG as (N)
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1,702,883 + HP15_1606 0.61 +2.2
1,703,335 - HP15_1607 0.35 +1.6
1,703,374 - HP15_1607 0.40 -0.7
1,703,394 - HP15_1607 0.43 -0.2
1,703,649 + HP15_1607 0.78 -1.1
1,703,690 + HP15_1607 0.84 -0.2
1,703,762 - +0.6
1,703,819 + -0.0
1,704,070 + HP15_1608 0.26 -0.4
1,704,078 - HP15_1608 0.27 +2.0
1,704,078 - HP15_1608 0.27 +2.7
1,704,147 - HP15_1608 0.34 +1.6
1,704,351 - HP15_1608 0.54 +2.9
1,704,537 - HP15_1608 0.72 +0.0
1,704,563 + HP15_1608 0.75 +1.8
1,704,873 - +2.3
1,704,995 - HP15_1609 0.14 +1.6
1,705,007 + HP15_1609 0.15 +0.3
1,705,007 + HP15_1609 0.15 -1.4
1,705,015 - HP15_1609 0.15 -0.2
1,705,094 - HP15_1609 0.21 +0.1
1,705,408 - HP15_1609 0.45 +1.8
1,705,504 - HP15_1609 0.53 -0.3
1,705,638 + HP15_1609 0.63 +2.1

Or see this region's nucleotide sequence