Experiment: NAG as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1606 and HP15_1607 are separated by 59 nucleotides HP15_1607 and HP15_1608 are separated by 6 nucleotides HP15_1608 and HP15_1609 are separated by 2 nucleotides
HP15_1606: HP15_1606 - general secretion pathway protein I-like protein, at 1,702,653 to 1,703,027
_1606
HP15_1607: HP15_1607 - general secretion pathway protein J-like protein, at 1,703,087 to 1,703,803
_1607
HP15_1608: HP15_1608 - general secretion pathway protein K-like protein, at 1,703,810 to 1,704,814
_1608
HP15_1609: HP15_1609 - general secretion pathway protein L, at 1,704,817 to 1,706,121
_1609
Position (kb)
1703
1704
1705 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1702.883 kb on + strand, within HP15_1606 at 1703.335 kb on - strand, within HP15_1607 at 1703.374 kb on - strand, within HP15_1607 at 1703.394 kb on - strand, within HP15_1607 at 1703.649 kb on + strand, within HP15_1607 at 1703.690 kb on + strand, within HP15_1607 at 1703.762 kb on - strand at 1703.819 kb on + strand at 1704.070 kb on + strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.147 kb on - strand, within HP15_1608 at 1704.351 kb on - strand, within HP15_1608 at 1704.537 kb on - strand, within HP15_1608 at 1704.563 kb on + strand, within HP15_1608 at 1704.873 kb on - strand at 1704.995 kb on - strand, within HP15_1609 at 1705.007 kb on + strand, within HP15_1609 at 1705.007 kb on + strand, within HP15_1609 at 1705.015 kb on - strand, within HP15_1609 at 1705.094 kb on - strand, within HP15_1609 at 1705.408 kb on - strand, within HP15_1609 at 1705.504 kb on - strand, within HP15_1609 at 1705.638 kb on + strand, within HP15_1609
Per-strain Table
Position Strand Gene LocusTag Fraction NAG as (N) remove 1,702,883 + HP15_1606 0.61 +2.2 1,703,335 - HP15_1607 0.35 +1.6 1,703,374 - HP15_1607 0.40 -0.7 1,703,394 - HP15_1607 0.43 -0.2 1,703,649 + HP15_1607 0.78 -1.1 1,703,690 + HP15_1607 0.84 -0.2 1,703,762 - +0.6 1,703,819 + -0.0 1,704,070 + HP15_1608 0.26 -0.4 1,704,078 - HP15_1608 0.27 +2.0 1,704,078 - HP15_1608 0.27 +2.7 1,704,147 - HP15_1608 0.34 +1.6 1,704,351 - HP15_1608 0.54 +2.9 1,704,537 - HP15_1608 0.72 +0.0 1,704,563 + HP15_1608 0.75 +1.8 1,704,873 - +2.3 1,704,995 - HP15_1609 0.14 +1.6 1,705,007 + HP15_1609 0.15 +0.3 1,705,007 + HP15_1609 0.15 -1.4 1,705,015 - HP15_1609 0.15 -0.2 1,705,094 - HP15_1609 0.21 +0.1 1,705,408 - HP15_1609 0.45 +1.8 1,705,504 - HP15_1609 0.53 -0.3 1,705,638 + HP15_1609 0.63 +2.1
Or see this region's nucleotide sequence